ntSynt Report — Muscidae house flies

Assembly statistics

Statistic	Value
Number of assemblies	22
Range of number of chromosomes	5 – 7
Genome size range (Mbp)	574.2 – 1754.0

Source: Muscidae_house_flies_assemblies/Muscidae_house_flies_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	411
Average synteny coverage (%)	3.86
Synteny coverage of smallest genome (%)	4.12
N50 length of synteny blocks (bp)	140,174

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
ori_change	245
indel	148
id_change	9
inconsistent_order	8

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Muscidae_house_flies_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Muscidae_house_flies_ribbon-plot_tree.html