RL Warren 12-APR-2019

This directory contains the k40 ntEdit-polished Axolotl genome draft.

ntEdit polishing of the Axolotl (mexican salamander) PacBio draft genome, largest yet@32Gbp. After ntHits on avail. Illumina seqs(<8X), https://github.com/bcgsc/ntedit  took <20m, 94GB RAM & made 59M edits+fixed frame shift errors to recover 106 (3%) xtra complete BUSCO genes.


nthits resource log : nthitsk40full.time
ntedit resource log : nteditAxolotlk40.time

ntedit changes file : nteditAxolotlk40full_changes.tsv.gz
ntedit edited draft : nteditAxolotlk40full_edited.fa.gz

command used to run : runme.sh
file of read files  : reads.in

summarized busco results : Axolotlk40full_edited_BUSCOalluvial.png