All statistics are based on contigs of size >= 3000 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs). Assembly ragoo ragoo_broken # contigs (>= 0 bp) 3952 - # contigs (>= 1000 bp) 356 - # contigs (>= 5000 bp) 54 2264 # contigs (>= 10000 bp) 30 1858 # contigs (>= 25000 bp) 25 1419 # contigs (>= 50000 bp) 24 1148 Total length (>= 0 bp) 2782077598 - Total length (>= 1000 bp) 2780795051 - Total length (>= 5000 bp) 2780216374 2777992962 Total length (>= 10000 bp) 2780046222 2775105469 Total length (>= 25000 bp) 2779977172 2767942004 Total length (>= 50000 bp) 2779927584 2758344402 # contigs 105 3074 Largest contig 232877725 29566840 Total length 2780406779 2780103619 Reference length 3088269832 3088269832 Reference GC (%) 40.87 40.87 N50 148250369 6020864 NG50 140877292 5372974 N75 110709717 2892832 NG75 77886719 2031211 L50 8 133 LG50 9 161 L75 13 300 LG75 16 396 # misassemblies 1370 583 # misassembled contigs 23 368 Misassembled contigs length 2777487764 612460898 # local misassemblies 6911 6671 # scaffold gap ext. mis. 801 - # scaffold gap loc. mis. 407 - # possible TEs 142 102 # unaligned mis. contigs 1 97 # unaligned contigs 67 + 31 part 407 + 1228 part Unaligned length 19641466 18929772 Genome fraction (%) 94.129 94.141 Duplication ratio 0.998 0.998 # N's per 100 kbp 10.69 0.00 # mismatches per 100 kbp 232.03 230.91 # indels per 100 kbp 103.31 103.33 Largest alignment 91983602 29501566 Total aligned length 2759831659 2760571522 NA50 23408185 5408338 NGA50 17977032 4629634 NA75 10936729 2498450 NGA75 6967052 1752501 LA50 38 146 LGA50 46 176 LA75 84 335 LGA75 109 445