All statistics are based on contigs of size >= 3000 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs). Assembly ragoo ragoo_broken # contigs (>= 0 bp) 1435419 - # contigs (>= 1000 bp) 2831 - # contigs (>= 5000 bp) 53 139139 # contigs (>= 10000 bp) 33 83635 # contigs (>= 25000 bp) 25 26280 # contigs (>= 50000 bp) 24 5705 Total length (>= 0 bp) 3082652774 - Total length (>= 1000 bp) 2722031945 - Total length (>= 5000 bp) 2718719136 2399069817 Total length (>= 10000 bp) 2718580520 1999788899 Total length (>= 25000 bp) 2718471030 1097967899 Total length (>= 50000 bp) 2718445108 396143940 # contigs 94 255063 Largest contig 228800560 263849 Total length 2718875155 2694993419 Reference length 3088269832 3088269832 Reference GC (%) 40.87 40.87 N50 143756248 19969 NG50 138077347 16562 N75 106533132 9719 NG75 76127222 6026 L50 8 37463 LG50 9 48281 L75 13 85812 LG75 16 124069 # misassemblies 1697 183 # misassembled contigs 23 177 Misassembled contigs length 2716454025 3675497 # local misassemblies 1215 1206 # scaffold gap ext. mis. 2058 - # scaffold gap loc. mis. 121193 - # possible TEs 622 16 # unaligned mis. contigs 2 35 # unaligned contigs 60 + 33 part 4630 + 1263 part Unaligned length 11539043 9201562 Genome fraction (%) 90.975 90.939 Duplication ratio 1.013 1.005 # N's per 100 kbp 882.38 5.18 # mismatches per 100 kbp 97.25 95.43 # indels per 100 kbp 27.47 23.01 Largest alignment 54565772 263815 Total aligned length 2694225614 2684110545 NA50 15658684 19912 NGA50 13723921 16511 NA75 9317347 9651 NGA75 4952225 5952 LA50 52 37539 LGA50 64 48390 LA75 108 86090 LGA75 150 124684