All statistics are based on contigs of size >= 3000 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs). Assembly ragoo_plus_missing ragoo_plus_missing_broken # contigs (>= 0 bp) 1430440 - # contigs (>= 1000 bp) 9966 - # contigs (>= 5000 bp) 4820 131209 # contigs (>= 10000 bp) 4192 82477 # contigs (>= 25000 bp) 3534 28759 # contigs (>= 50000 bp) 3125 7056 Total length (>= 0 bp) 3086780831 - Total length (>= 1000 bp) 2728905326 - Total length (>= 5000 bp) 2719240352 2446591761 Total length (>= 10000 bp) 2714774924 2095259797 Total length (>= 25000 bp) 2704082193 1244948246 Total length (>= 50000 bp) 2689419987 499106910 # contigs 5578 222933 Largest contig 32571614 263849 Total length 2722243516 2684608767 Reference length 3088269832 3088269832 Reference GC (%) 40.87 40.87 N50 1636828 22902 NG50 1381442 18897 N75 819801 11184 NG75 537672 6841 L50 423 32827 LG50 545 42538 L75 1011 74743 LG75 1427 109043 # misassemblies 946 184 # misassembled contigs 466 178 Misassembled contigs length 598650761 3879555 # local misassemblies 7545 1326 # scaffold gap ext. mis. 318 - # scaffold gap loc. mis. 57895 - # possible TEs 292 18 # unaligned mis. contigs 51 47 # unaligned contigs 263 + 1564 part 3720 + 1259 part Unaligned length 12777947 8647593 Genome fraction (%) 91.861 90.748 Duplication ratio 1.004 1.004 # N's per 100 kbp 1260.61 5.33 # mismatches per 100 kbp 120.71 95.67 # indels per 100 kbp 28.08 23.10 Largest alignment 19706158 263815 Total aligned length 2684457203 2674426415 NA50 1494295 22827 NGA50 1269297 18827 NA75 747190 11117 NGA75 471677 6756 LA50 489 32901 LGA50 621 42647 LA75 1127 75013 LGA75 1585 109635