All statistics are based on contigs of size >= 3000 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs). Assembly ragoo ragoo_broken ragoo_placed ragoo_placed_broken # contigs (>= 0 bp) 1421251 228592 24 228563 # contigs (>= 1000 bp) 865 222228 24 222199 # contigs (>= 5000 bp) 39 131185 24 131176 # contigs (>= 10000 bp) 26 82468 24 82467 # contigs (>= 25000 bp) 24 28765 24 28765 # contigs (>= 50000 bp) 24 7062 24 7062 Total length (>= 0 bp) 3087695731 2693845418 2728832009 2693726855 Total length (>= 1000 bp) 2729913832 2690044426 2728832009 2689925863 Total length (>= 5000 bp) 2728949448 2446736833 2728832009 2446672494 Total length (>= 10000 bp) 2728858385 2095503478 2728832009 2095490996 Total length (>= 25000 bp) 2728832009 1245448793 2728832009 1245448793 Total length (>= 50000 bp) 2728832009 499556580 2728832009 499556580 # contigs 47 228592 24 228563 Largest contig 229173961 263849 229173961 263849 Total length 2728980401 2693845418 2728832009 2693726855 Reference length 3088269832 3088269832 3088269832 3088269832 Reference GC (%) 40.87 40.87 40.87 40.87 N50 143696723 22813 143696723 22816 NG50 138213962 18904 138213962 18904 N75 106961314 11087 106961314 11088 NG75 76219284 6843 76219284 6843 L50 8 33014 8 33011 LG50 9 42518 9 42518 L75 13 75334 13 75327 LG75 16 108999 16 109000 # misassemblies 2769 186 2769 186 # misassembled contigs 23 180 23 180 Misassembled contigs length 2725879431 3787411 2725879431 3787411 # local misassemblies 7328 1330 7328 1330 # scaffold gap ext. mis. 1855 0 1855 0 # scaffold gap loc. mis. 61275 0 61275 0 # possible TEs 938 18 938 18 # unaligned mis. contigs 2 47 1 46 # unaligned contigs 22 + 25 part 4497 + 1303 part 0 + 24 part 4469 + 1302 part Unaligned length 14273304 9684997 14138942 9567713 Genome fraction (%) 92.005 91.012 92.005 91.012 Duplication ratio 1.004 1.004 1.004 1.004 # N's per 100 kbp 1291.23 5.32 1290.83 5.32 # mismatches per 100 kbp 119.68 96.21 119.68 96.21 # indels per 100 kbp 28.14 23.13 28.14 23.13 Largest alignment 39139429 263815 39139429 263815 Total aligned length 2689385191 2682582282 2689383915 2682581006 NA50 8525986 22730 8525986 22731 NGA50 7005813 18836 7005813 18836 NA75 3594913 11015 3594913 11017 NGA75 1845622 6760 1845622 6760 LA50 92 33086 92 33084 LGA50 115 42625 115 42625 LA75 214 75605 214 75596 LGA75 318 109586 318 109586