All statistics are based on contigs of size >= 500 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs). Assembly ragoo ragoo_broken ragoo_placed ragoo_placed_broken # contigs (>= 0 bp) 50986 9404 6 7356 # contigs (>= 1000 bp) 18 7104 6 7092 # contigs (>= 5000 bp) 7 4131 6 4130 # contigs (>= 10000 bp) 7 2573 6 2572 # contigs (>= 25000 bp) 6 1003 6 1003 # contigs (>= 50000 bp) 6 327 6 327 Total length (>= 0 bp) 101126907 94529690 93682475 93035739 Total length (>= 1000 bp) 93712761 93014309 93682475 92984023 Total length (>= 5000 bp) 93696111 84607424 93682475 84593788 Total length (>= 10000 bp) 93696111 73555904 93682475 73542268 Total length (>= 25000 bp) 93682475 48565334 93682475 48565334 Total length (>= 50000 bp) 93682475 24992868 93682475 24992868 # contigs 2054 9404 6 7356 Largest contig 19285614 213770 19285614 213770 Total length 95176426 94529690 93682475 93035739 Reference length 100272607 100272607 100272607 100272607 Reference GC (%) 35.44 35.44 35.44 35.44 N50 16264009 25876 16264009 26470 NG50 16264009 23928 16264009 23928 N75 13934063 11270 13934063 11905 NG75 13934063 9066 13934063 9059 L50 3 952 3 924 LG50 3 1068 3 1068 L75 5 2322 5 2226 LG75 5 2747 5 2747 # misassemblies 947 93 944 90 # misassembled contigs 9 91 6 88 Misassembled contigs length 93684465 2342190 93682475 2340200 # local misassemblies 221 107 219 105 # scaffold gap ext. mis. 1893 0 1893 0 # scaffold gap loc. mis. 2829 0 2829 0 # unaligned mis. contigs 6 8 0 2 # unaligned contigs 8 + 19 part 41 + 39 part 0 + 6 part 33 + 26 part Unaligned length 248449 72247 215953 39751 Genome fraction (%) 93.680 93.751 92.286 92.357 Duplication ratio 1.011 1.005 1.010 1.004 # N's per 100 kbp 682.31 2.81 693.19 2.86 # mismatches per 100 kbp 14.87 12.89 14.70 12.70 # indels per 100 kbp 6.24 4.05 6.26 4.03 Largest alignment 1552349 213770 1552349 213770 Total aligned length 94276570 94425274 92819147 92967851 NA50 255099 25579 262372 26036 NGA50 246575 23662 246575 23662 NA75 136096 11092 141043 11716 NGA75 122217 8957 122217 8957 LA50 103 963 100 934 LGA50 113 1080 113 1080 LA75 225 2351 217 2253 LGA75 255 2782 255 2782