HQ genome annotations

Working directory
/projects/spruceup_scratch/psitchensis/Q903/annotation/genome-annotation/Maker/ValidatePredictedGenesThirdStepCumulatPolishEngelmann/PositionOnContig/NCBI4Greg/

Repeat annotation files - result of using custom repeat library to mask repeats on the genome assembly using RepeatMasker:
Q903_v1_1000plus.seqtk_all.repeats.out.gz - TSV-formatted output annotation file from RepeatMasker
Q903_v1_1000plus.seqtk_all.repeats.out.gff3.gz - Above file converted to GFF3 format