STATISTIC		CEMT_7	CEMT_8	CEMT_9	CEMT_1	CEMT_4	CEMT_5	CEMT_6	WT312	WT313	WT340	WT341	WT354	WT355
ensembl_tss_Plus_One.gains		13681.000	681.000	3127.000	508.000	586.000	3676.000	760.000	665.000	3730.000	778.000	640.000	684.000	684.000
ensembl_tssStart_to_tssStop.gains		2920.000	310.000	863.000	250.000	289.000	840.000	408.000	344.000	856.000	357.000	318.000	324.000	317.000
refseq_tss_Plus_One.gains		2417.000	108.000	669.000	83.000	96.000	536.000	100.000	105.000	531.000	111.000	108.000	117.000	111.000
refseq_tssStart_to_tssStop.gains		1751.000	119.000	498.000	100.000	114.000	426.000	109.000	124.000	409.000	121.000	119.000	128.000	132.000
ensembl_tss_Plus_One.losses		1129.000	1073.000	1039.000	6553.000	6482.000	2313.000	6964.000	923.000	22391.000	943.000	12233.000	6279.000	7051.000
ensembl_tssStart_to_tssStop.losses		598.000	586.000	554.000	2449.000	2443.000	1113.000	2545.000	524.000	4261.000	528.000	2741.000	2247.000	2403.000
refseq_tss_Plus_One.losses		262.000	251.000	235.000	1505.000	1492.000	458.000	1606.000	224.000	3851.000	222.000	2202.000	1488.000	1598.000
refseq_tssStart_to_tssStop.losses		235.000	216.000	203.000	1097.000	1088.000	379.000	1167.000	207.000	2712.000	213.000	1557.000	1086.000	1185.000
mean(sizes)		770620.971	770620.971	382475.872	649207.575	601472.595	522934.049	672046.689	258214.195	1165934.651	300411.995	769244.273	646403.132	608176.687
sd(sizes)		3672754.436	3672754.436	2500076.532	5826835.890	4494791.372	2882359.958	5339835.943	2196444.964	5569058.848	2358940.633	5858445.723	4617693.445	4375309.886
mean(sizes|gain)		971667.608	971667.608	317564.603	186450.927	181049.842	523138.704	207593.202	190705.399	391118.154	272186.143	250681.236	274399.813	259924.393
sd(sizes|gain		3965445.645	3965445.645	1780512.474	1461164.514	1437096.529	2499813.312	1469420.361	1447820.680	1821774.445	1884798.539	1812655.394	1992652.037	1856462.043
mean(sizes|loss)		476192.016	476192.016	474620.029	1178072.315	1105561.567	522692.636	1226249.643	341463.383	2040480.005	335875.246	1472426.613	1070775.850	955024.738
sd(sizes|loss)		3183835.501	3183835.501	3263714.832	8365277.639	6449905.622	3283149.426	7717320.877	2864347.370	7810068.041	2849866.861	8705260.608	6394893.563	5883205.319
Comparison type	Library Type	CEMT_7	CEMT_8	CEMT_9	CEMT_1	CEMT_4	CEMT_5	CEMT_6	WT312	WT313	WT340	WT341	WT354	WT355
All (Gains, Losses, Normal)	WGS	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000
All (Gains, Losses, Normal)	H3K9me3	0.829	0.839	0.832	0.264	0.629	0.498	0.839	0.860	0.826	0.646	0.554	0.617	0.796
All (Gains, Losses, Normal)	H3K27me3	0.786	0.667	0.653	0.163	0.087	0.453	0.747	0.738	0.773	0.320	0.197	0.222	0.219
All (Gains, Losses, Normal)	H3K4me1	0.498	0.209	0.211	0.310	0.053	0.251	0.657	0.639	0.524	0.141	0.132	0.180	0.111
All (Gains, Losses, Normal)	H3K36me3	0.480	0.199	0.186	0.145	0.022	0.065	0.462	0.331	0.374	0.044	0.042	0.091	0.143
All (Gains, Losses, Normal)	H3K27ac	0.433	0.154	0.118	0.261	0.021	0.092	0.472	0.523	0.181	0.039	0.075	0.101	0.082
All (Gains, Losses, Normal)	H3K4me3	0.005	0.025	0.038	0.164	0.021	0.036	0.260	0.396	0.164	0.027	0.039	0.022	0.045
Copy Number Gains	WGS	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000
Copy Number Gains	H3K9me3	0.893	0.887	0.867	0.608	0.770	0.734	0.874	0.900	0.821	0.818	0.802	0.863	0.890
Copy Number Gains	H3K27me3	0.875	0.861	0.828	0.377	0.381	0.743	0.864	0.886	0.815	0.775	0.619	0.740	0.634
Copy Number Gains	H3K36me3	0.721	0.749	0.481	0.314	0.108	0.237	0.848	0.874	0.698	0.515	0.416	0.648	0.773
Copy Number Gains	H3K4me1	0.720	0.787	0.569	0.651	0.277	0.619	0.860	0.892	0.745	0.729	0.646	0.757	0.647
Copy Number Gains	H3K27ac	0.702	0.772	0.397	0.489	0.117	0.288	0.855	0.885	0.424	0.453	0.614	0.628	0.563
Copy Number Gains	H3K4me3	0.004	0.295	0.131	0.382	0.127	0.107	0.849	0.879	0.429	0.334	0.415	0.220	0.466
Copy Number Gains + Losses	WGS	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000
Copy Number Gains + Losses	H3K9me3	0.883	0.868	0.851	0.599	0.731	0.707	0.863	0.886	0.771	0.757	0.767	0.844	0.890
Copy Number Gains + Losses	H3K27me3	0.865	0.825	0.799	0.417	0.386	0.719	0.848	0.850	0.763	0.702	0.531	0.696	0.612
Copy Number Gains + Losses	H3K36me3	0.716	0.731	0.479	0.371	0.109	0.250	0.819	0.818	0.606	0.477	0.180	0.511	0.655
Copy Number Gains + Losses	H3K4me1	0.714	0.759	0.560	0.636	0.264	0.592	0.847	0.858	0.671	0.666	0.453	0.682	0.539
Copy Number Gains + Losses	H3K27ac	0.696	0.751	0.397	0.502	0.088	0.280	0.826	0.862	0.361	0.433	0.303	0.503	0.422
Copy Number Gains + Losses	H3K4me3	0.004	0.283	0.133	0.419	0.097	0.109	0.790	0.842	0.342	0.318	0.163	0.140	0.277
Copy Number Losses	WGS	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000
Copy Number Losses	H3K9me3	0.591	0.457	0.551	0.461	0.569	0.545	0.506	0.570	0.469	0.655	0.317	0.461	0.157
Copy Number Losses	H3K27me3	0.556	0.382	0.562	0.350	0.176	0.536	0.481	0.575	0.471	0.676	0.209	0.293	0.109
Copy Number Losses	H3K4me1	0.560	0.319	0.567	0.455	0.136	0.453	0.452	0.574	0.302	0.676	0.131	0.260	0.124
Copy Number Losses	H3K36me3	0.566	0.318	0.533	0.319	0.042	0.253	0.390	0.569	0.238	0.574	0.044	0.114	0.103
Copy Number Losses	H3K27ac	0.532	0.302	0.504	0.427	0.054	0.208	0.373	0.575	0.138	0.507	0.078	0.160	0.132
Copy Number Losses	H3K4me3	0.009	0.126	0.328	0.326	0.043	0.103	0.250	0.569	0.120	0.335	0.049	0.029	0.039
Normal Copy Number Only	WGS	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000
Normal Copy Number Only	H3K9me3	0.103	0.101	0.188	0.133	0.404	0.287	0.253	0.253	0.828	0.164	0.097	0.069	0.148
Normal Copy Number Only	H3K27me3	0.059	0.080	0.075	0.077	0.034	0.266	0.098	0.155	0.680	0.083	0.051	0.045	0.022
Normal Copy Number Only	H3K4me1	0.086	0.078	0.081	0.170	0.023	0.135	0.066	0.063	0.335	0.001	0.013	0.002	0.023
Normal Copy Number Only	H3K36me3	0.081	0.089	0.077	0.068	0.008	0.035	0.037	-0.028	0.218	-0.054	-0.015	-0.032	0.036
Normal Copy Number Only	H3K27ac	0.060	0.053	0.039	0.162	0.011	0.054	0.047	0.036	0.105	-0.015	0.015	-0.003	0.019
Normal Copy Number Only	H3K4me3	0.028	0.031	0.023	0.088	0.011	0.022	0.047	0.036	0.092	0.008	0.021	0.024	0.039