/gsc/software/linux-x86_64/samtools-0.1.7a/samtools merge /projects/NBL/HS1194/merged.tophat.bam /projects/NBL/HS1194/302P8AAXX_4/tophat/accepted_hits.sam.bam /projects/NBL/HS1194/311L9AAXX_3/tophat/accepted_hits.sam.bam /projects/NBL/HS1194/311L9AAXX_4/tophat/accepted_hits.sam.bam /projects/NBL/HS1194/311L9AAXX_5/tophat/accepted_hits.sam.bam /projects/NBL/HS1194/311L9AAXX_6/tophat/accepted_hits.sam.bam /projects/NBL/HS1194/311L9AAXX_7/tophat/accepted_hits.sam.bam /projects/NBL/HS1194/311L9AAXX_8/tophat/accepted_hits.sam.bam 
/gsc/software/linux-x86_64/samtools-0.1.7a/samtools merge /projects/NBL/HS1195/merged.tophat.bam /projects/NBL/HS1195/302NNAAXX_5/tophat/accepted_hits.sam.bam /projects/NBL/HS1195/30TTYAAXX_2/tophat/accepted_hits.sam.bam /projects/NBL/HS1195/30TTYAAXX_3/tophat/accepted_hits.sam.bam /projects/NBL/HS1195/30TTYAAXX_4/tophat/accepted_hits.sam.bam /projects/NBL/HS1195/30TTYAAXX_5/tophat/accepted_hits.sam.bam /projects/NBL/HS1195/30TTYAAXX_6/tophat/accepted_hits.sam.bam /projects/NBL/HS1195/30TTYAAXX_7/tophat/accepted_hits.sam.bam 
/gsc/software/linux-x86_64/samtools-0.1.7a/samtools merge /projects/NBL/HS1196/merged.tophat.bam /projects/NBL/HS1196/302NNAAXX_6/tophat/accepted_hits.sam.bam /projects/NBL/HS1196/3153YAAXX_3/tophat/accepted_hits.sam.bam /projects/NBL/HS1196/3153YAAXX_4/tophat/accepted_hits.sam.bam /projects/NBL/HS1196/3153YAAXX_5/tophat/accepted_hits.sam.bam /projects/NBL/HS1196/3153YAAXX_6/tophat/accepted_hits.sam.bam /projects/NBL/HS1196/3153YAAXX_7/tophat/accepted_hits.sam.bam /projects/NBL/HS1196/3153YAAXX_8/tophat/accepted_hits.sam.bam 
/gsc/software/linux-x86_64/samtools-0.1.7a/samtools merge /projects/NBL/HS1197/merged.tophat.bam /projects/NBL/HS1197/302NNAAXX_7/tophat/accepted_hits.sam.bam /projects/NBL/HS1197/311NGAAXX_2/tophat/accepted_hits.sam.bam /projects/NBL/HS1197/311NGAAXX_3/tophat/accepted_hits.sam.bam /projects/NBL/HS1197/311NGAAXX_4/tophat/accepted_hits.sam.bam /projects/NBL/HS1197/311NGAAXX_5/tophat/accepted_hits.sam.bam /projects/NBL/HS1197/311NGAAXX_6/tophat/accepted_hits.sam.bam /projects/NBL/HS1197/311NGAAXX_7/tophat/accepted_hits.sam.bam 
/gsc/software/linux-x86_64/samtools-0.1.7a/samtools merge /projects/NBL/HS1198/merged.tophat.bam /projects/NBL/HS1198/302P8AAXX_5/tophat/accepted_hits.sam.bam /projects/NBL/HS1198/30UBRAAXX_3/tophat/accepted_hits.sam.bam /projects/NBL/HS1198/30UBRAAXX_4/tophat/accepted_hits.sam.bam /projects/NBL/HS1198/30UBRAAXX_5/tophat/accepted_hits.sam.bam /projects/NBL/HS1198/30UBRAAXX_6/tophat/accepted_hits.sam.bam /projects/NBL/HS1198/30UBRAAXX_7/tophat/accepted_hits.sam.bam /projects/NBL/HS1198/30UBRAAXX_8/tophat/accepted_hits.sam.bam 
/gsc/software/linux-x86_64/samtools-0.1.7a/samtools merge /projects/NBL/HS1795/merged.tophat.bam /projects/NBL/HS1795/700B4AAXX_2/tophat/accepted_hits.sam.bam /projects/NBL/HS1795/700B4AAXX_3/tophat/accepted_hits.sam.bam /projects/NBL/HS1795/700B4AAXX_4/tophat/accepted_hits.sam.bam /projects/NBL/HS1795/700FNAAXX_8/tophat/accepted_hits.sam.bam 
/gsc/software/linux-x86_64/samtools-0.1.7a/samtools merge /projects/NBL/HS1797/merged.tophat.bam /projects/NBL/HS1797/616GYAAXX_1/tophat/accepted_hits.sam.bam /projects/NBL/HS1797/616GYAAXX_2/tophat/accepted_hits.sam.bam /projects/NBL/HS1797/616GYAAXX_3/tophat/accepted_hits.sam.bam /projects/NBL/HS1797/61B4HAAXX_1/tophat/accepted_hits.sam.bam 
/gsc/software/linux-x86_64/samtools-0.1.7a/samtools merge /projects/NBL/HS1799/merged.tophat.bam /projects/NBL/HS1799/61074AAXX_3/tophat/accepted_hits.sam.bam /projects/NBL/HS1799/61074AAXX_4/tophat/accepted_hits.sam.bam /projects/NBL/HS1799/61074AAXX_5/tophat/accepted_hits.sam.bam /projects/NBL/HS1799/61B1HAAXX_7/tophat/accepted_hits.sam.bam 
/gsc/software/linux-x86_64/samtools-0.1.7a/samtools merge /projects/NBL/HS1801/merged.tophat.bam /projects/NBL/HS1801/61074AAXX_6/tophat/accepted_hits.sam.bam /projects/NBL/HS1801/61074AAXX_7/tophat/accepted_hits.sam.bam /projects/NBL/HS1801/61074AAXX_8/tophat/accepted_hits.sam.bam /projects/NBL/HS1801/61B1HAAXX_8/tophat/accepted_hits.sam.bam 
/gsc/software/linux-x86_64/samtools-0.1.7a/samtools merge /projects/NBL/HS1803/merged.tophat.bam /projects/NBL/HS1803/616GYAAXX_4/tophat/accepted_hits.sam.bam /projects/NBL/HS1803/616GYAAXX_5/tophat/accepted_hits.sam.bam /projects/NBL/HS1803/616GYAAXX_6/tophat/accepted_hits.sam.bam /projects/NBL/HS1803/61B4HAAXX_8/tophat/accepted_hits.sam.bam