SEQAS-154

Karen Mungall added a comment - 26/Oct/11 11:44 AM

Shaun please can you do a targetted assembly of the 2 regions below (hg19a coords) for each of the 10 libraries listed

ARID1A(chr1:27,022,522-27,108,601)
ARID1B (chr6:157,099,086-157,530,401)

NBL1 HS1780 and HS2642 /projects/analysis/analysis6/NBL1/
NBL8 HS1798 and HS2644 /projects/analysis/analysis6/NBL8/
NBL5 HS1784 and HS2718 /projects/analysis/analysis6/NBL5/
NBL2 HS1781 /projects/analysis/analysis5/HS1781/meta_bwa/hg19a
NBL3 HS1782 /projects/analysis/analysis5/HS1782/meta_bwa/hg19a
NBL4 HS1783 /projects/analysis/analysis5/HS1783/meta_bwa/hg19a
NBL6 HS1794 /projects/analysis/analysis5/HS1794/meta_bwa/hg19a
NBL7 HS1796 /projects/analysis/analysis5/HS1796/meta_bwa/hg19a
NBL9 HS1800 /projects/analysis/analysis5/HS1800/meta_bwa/hg19a
NBL10 HS1802 /projects/analysis/analysis5/HS1802/meta_bwa/hg19a

We need to run the trans-ABYSS indel code on the assemblies