These libraries have duplicate read IDs. The file named -dups.sam.gz has the duplicate read IDs. The file named .sam.gz does not. ==> NBL01G.sam.d <== SOLEXA2_1:3:114:388:1117 SOLEXA2_1:4:73:164:1842 ==> NBL08.sam.d <== SOLEXA7_1:3:80:169:711 SOLEXA7_1:5:58:1661:1460 SOLEXA7_1:7:90:1483:764 SOLEXA7_1:8:104:881:1354 SOLEXA7_1:8:118:1431:1783 ==> NBL10.sam.d <== SOLEXA8_1:5:108:298:148