bunzip2 -df /projects/NBL/HS1797/616GYAAXX_1/tophat/616GYAAXX_1_1_concat_qseq.txt.bz2 ...
bunzip2 -df /projects/NBL/HS1797/616GYAAXX_1/tophat/616GYAAXX_1_2_concat_qseq.txt.bz2 ...
/home/rcorbett/aligners/tophat/tophat-1.0.13/bin/tophat -r 237 -o /projects/NBL/HS1797/616GYAAXX_1/tophat /projects/rcorbettprj/trans_abyss/bowtie_index/hg18 /projects/NBL/HS1797/616GYAAXX_1/tophat/616GYAAXX_1_1.fastq /projects/NBL/HS1797/616GYAAXX_1/tophat/616GYAAXX_1_2.fastq ...