Information for 24-GTCTGCTAAGTA (Motif 31)

C T A G A C G T G T A C A C G T A C T G A G T C A G C T C G T A C T G A T A C G A G C T T C G A
Reverse Opposite:
A C G T C T G A A G T C A G C T C G A T C T G A A C T G G T A C T G C A A C T G C G T A A G T C
p-value:1e-25
log p-value:-5.940e+01
Information Content per bp:1.836
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif0.19%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets84.2 +/- 51.8bp
Average Position of motif in Background117.8 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0036.1_Gsx2/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GTCTGCTAAGTA----
NTNNGCTAATTANCNT
 C T A G A C G T G T A C A C G T A C T G A G T C A G C T C G T A C T G A T A C G A G C T T C G A A C G T A C G T A C G T A C G T
G T C A G A C T T A G C T C G A C T A G A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C G A G A T C A T G C A G C T

PH0081.1_Pdx1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTCTGCTAAGTA----
NTGNGCTAATTACCNN
 C T A G A C G T G T A C A C G T A C T G A G T C A G C T C G T A C T G A T A C G A G C T T C G A A C G T A C G T A C G T A C G T
G T C A G A C T A T C G C G T A C T A G A T G C G A C T T G C A G C T A C A G T A C G T C T G A T A G C G A T C A C G T A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTCTGCTAAGTA
TTATGCAAATTA
 C T A G A C G T G T A C A C G T A C T G A G T C A G C T C G T A C T G A T A C G A G C T T C G A
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GTCTGCTAAGTA
VBSYGTCTGG------
 A C G T A C G T A C G T A C G T C T A G A C G T G T A C A C G T A C T G A G T C A G C T C G T A C T G A T A C G A G C T T C G A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PH0097.1_Lhx6_2/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GTCTGCTAAGTA------
-TCCACTAATTAGCGGTT
 C T A G A C G T G T A C A C G T A C T G A G T C A G C T C G T A C T G A T A C G A G C T T C G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T T G A C G A T C T C G A G A T C G A C T T C G A C T G A A G C T A G C T C T G A C T A G A G T C C A T G C T A G C G A T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GTCTGCTAAGTA
-GGTGCCAAGT-
 C T A G A C G T G T A C A C G T A C T G A G T C A G C T C G T A C T G A T A C G A G C T T C G A
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

POU1F1/MA0784.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GTCTGCTAAGTA-
AATATGCAAATTAG
 A C G T C T A G A C G T G T A C A C G T A C T G A G T C A G C T C G T A C T G A T A C G A G C T T C G A A C G T
C G T A C G T A C G A T C T G A G A C T C A T G A G T C G C T A C G T A G T C A C G A T A C G T C G T A C T A G

Hoxb5/MA0904.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GTCTGCTAAGTA----
ATGNGCTAATTANCNT
 C T A G A C G T G T A C A C G T A C T G A G T C A G C T C G T A C T G A T A C G A G C T T C G A A C G T A C G T A C G T A C G T
C G T A G A C T C A T G C G T A C T A G A T G C G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A C T G A C G T

PH0060.1_Hoxb5/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GTCTGCTAAGTA----
ATGNGCTAATTANCNT
 C T A G A C G T G T A C A C G T A C T G A G T C A G C T C G T A C T G A T A C G A G C T T C G A A C G T A C G T A C G T A C G T
C G T A G A C T C A T G C G T A C T A G A T G C G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A C T G A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GTCTGCTAAGTA-
-TATGCWAATBAV
 C T A G A C G T G T A C A C G T A C T G A G T C A G C T C G T A C T G A T A C G A G C T T C G A A C G T
A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G