Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 20630)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 28939)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-7675	-1.767e+04	0.0000	6290.0	30.49%	237.3	0.82%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-5821	-1.341e+04	0.0000	6163.0	29.87%	444.5	1.53%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-259	-5.976e+02	0.0000	301.0	1.46%	23.0	0.08%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-129	-2.993e+02	0.0000	2299.0	11.14%	1904.8	6.57%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-96	-2.218e+02	0.0000	1693.0	8.21%	1392.1	4.80%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-89	-2.062e+02	0.0000	1784.0	8.65%	1522.7	5.25%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-70	-1.621e+02	0.0000	3969.0	19.24%	4258.7	14.68%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-70	-1.620e+02	0.0000	2471.0	11.98%	2421.6	8.35%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-65	-1.503e+02	0.0000	9605.0	46.56%	11794.3	40.66%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-63	-1.474e+02	0.0000	7412.0	35.93%	8821.8	30.42%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-43	-9.930e+01	0.0000	2708.0	13.13%	2930.2	10.10%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-40	-9.388e+01	0.0000	1437.0	6.97%	1401.9	4.83%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-38	-8.800e+01	0.0000	1858.0	9.01%	1925.8	6.64%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-36	-8.359e+01	0.0000	1415.0	6.86%	1407.3	4.85%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-34	-8.007e+01	0.0000	145.0	0.70%	59.5	0.21%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-32	-7.584e+01	0.0000	1628.0	7.89%	1690.8	5.83%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-32	-7.538e+01	0.0000	2373.0	11.50%	2615.2	9.02%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-32	-7.538e+01	0.0000	3959.0	19.19%	4654.4	16.05%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-32	-7.421e+01	0.0000	2379.0	11.53%	2628.8	9.06%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-30	-7.039e+01	0.0000	3169.0	15.36%	3656.0	12.61%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-29	-6.789e+01	0.0000	2397.0	11.62%	2681.1	9.24%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-29	-6.775e+01	0.0000	1287.0	6.24%	1307.4	4.51%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-27	-6.440e+01	0.0000	2432.0	11.79%	2743.7	9.46%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-27	-6.269e+01	0.0000	1646.0	7.98%	1764.3	6.08%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-26	-6.154e+01	0.0000	2569.0	12.45%	2933.5	10.11%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-26	-6.078e+01	0.0000	4215.0	20.43%	5085.0	17.53%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-26	-6.040e+01	0.0000	1807.0	8.76%	1974.9	6.81%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-24	-5.705e+01	0.0000	3287.0	15.93%	3889.4	13.41%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-24	-5.672e+01	0.0000	3624.0	17.57%	4333.5	14.94%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-24	-5.579e+01	0.0000	2121.0	10.28%	2392.1	8.25%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-23	-5.515e+01	0.0000	847.0	4.11%	826.0	2.85%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-23	-5.502e+01	0.0000	3335.0	16.17%	3965.8	13.67%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-23	-5.302e+01	0.0000	183.0	0.89%	111.1	0.38%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-21	-4.870e+01	0.0000	657.0	3.18%	624.5	2.15%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-20	-4.798e+01	0.0000	1746.0	8.46%	1957.8	6.75%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-20	-4.729e+01	0.0000	631.0	3.06%	598.7	2.06%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-20	-4.646e+01	0.0000	1168.0	5.66%	1243.8	4.29%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-18	-4.185e+01	0.0000	4956.0	24.02%	6227.2	21.47%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-18	-4.181e+01	0.0000	1794.0	8.70%	2051.3	7.07%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-16	-3.895e+01	0.0000	960.0	4.65%	1019.9	3.52%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-16	-3.760e+01	0.0000	2086.0	10.11%	2452.7	8.46%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-16	-3.755e+01	0.0000	6164.0	29.88%	7911.4	27.28%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-16	-3.740e+01	0.0000	2984.0	14.46%	3630.0	12.52%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-16	-3.693e+01	0.0000	443.0	2.15%	411.8	1.42%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-15	-3.579e+01	0.0000	1051.0	5.09%	1145.1	3.95%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-15	-3.544e+01	0.0000	904.0	4.38%	965.9	3.33%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-15	-3.517e+01	0.0000	225.0	1.09%	176.8	0.61%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-15	-3.474e+01	0.0000	1721.0	8.34%	1999.3	6.89%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-14	-3.366e+01	0.0000	1474.0	7.14%	1690.0	5.83%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-14	-3.308e+01	0.0000	1100.0	5.33%	1220.0	4.21%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-13	-3.214e+01	0.0000	1247.0	6.04%	1409.4	4.86%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-13	-3.205e+01	0.0000	696.0	3.37%	725.1	2.50%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-13	-3.195e+01	0.0000	3237.0	15.69%	4010.1	13.83%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-13	-3.158e+01	0.0000	1232.0	5.97%	1393.1	4.80%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-13	-3.118e+01	0.0000	2083.0	10.10%	2492.1	8.59%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-13	-3.043e+01	0.0000	3502.0	16.98%	4378.2	15.10%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-13	-3.036e+01	0.0000	1677.0	8.13%	1970.6	6.79%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-13	-2.999e+01	0.0000	1400.0	6.79%	1616.7	5.57%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-12	-2.957e+01	0.0000	1019.0	4.94%	1135.7	3.92%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-12	-2.899e+01	0.0000	1663.0	8.06%	1961.7	6.76%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-12	-2.864e+01	0.0000	652.0	3.16%	685.2	2.36%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-12	-2.853e+01	0.0000	1060.0	5.14%	1192.7	4.11%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-12	-2.843e+01	0.0000	8992.0	43.59%	11929.3	41.13%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-12	-2.837e+01	0.0000	377.0	1.83%	359.4	1.24%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-12	-2.803e+01	0.0000	1685.0	8.17%	1996.4	6.88%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-11	-2.689e+01	0.0000	2101.0	10.18%	2548.4	8.79%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-11	-2.601e+01	0.0000	1564.0	7.58%	1853.7	6.39%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-11	-2.552e+01	0.0000	3086.0	14.96%	3868.4	13.34%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-10	-2.394e+01	0.0000	1758.0	8.52%	2121.8	7.32%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-9	-2.168e+01	0.0000	1219.0	5.91%	1436.9	4.95%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-9	-2.085e+01	0.0000	4679.0	22.68%	6078.6	20.96%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-8	-1.898e+01	0.0000	2877.0	13.95%	3656.4	12.61%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-7	-1.840e+01	0.0000	116.0	0.56%	92.4	0.32%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-7	-1.839e+01	0.0000	267.0	1.29%	261.7	0.90%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-7	-1.824e+01	0.0000	5584.0	27.07%	7356.2	25.36%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-7	-1.788e+01	0.0000	233.0	1.13%	223.1	0.77%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-7	-1.710e+01	0.0000	1889.0	9.16%	2353.6	8.11%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-7	-1.669e+01	0.0000	2841.0	13.77%	3634.3	12.53%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-7	-1.650e+01	0.0000	1128.0	5.47%	1355.1	4.67%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-7	-1.631e+01	0.0000	2252.0	10.92%	2846.7	9.81%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-6	-1.502e+01	0.0000	3837.0	18.60%	5009.1	17.27%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-6	-1.486e+01	0.0000	1616.0	7.83%	2012.4	6.94%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-6	-1.438e+01	0.0000	8233.0	39.91%	11095.7	38.26%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-6	-1.436e+01	0.0000	445.0	2.16%	493.8	1.70%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-6	-1.434e+01	0.0000	3626.0	17.58%	4731.5	16.31%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-6	-1.422e+01	0.0000	4201.0	20.36%	5519.6	19.03%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-6	-1.383e+01	0.0000	2007.0	9.73%	2545.5	8.78%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-5	-1.369e+01	0.0000	1623.0	7.87%	2033.6	7.01%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-5	-1.353e+01	0.0000	2035.0	9.86%	2586.9	8.92%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-5	-1.351e+01	0.0000	6024.0	29.20%	8042.9	27.73%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-5	-1.275e+01	0.0000	745.0	3.61%	886.0	3.05%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-5	-1.194e+01	0.0000	1472.0	7.14%	1850.5	6.38%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-5	-1.159e+01	0.0000	6136.0	29.74%	8234.5	28.39%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-4	-1.145e+01	0.0000	5484.0	26.58%	7334.0	25.29%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-4	-1.142e+01	0.0000	2292.0	11.11%	2959.2	10.20%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-4	-1.127e+01	0.0001	99.0	0.48%	88.1	0.30%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-4	-1.084e+01	0.0001	404.0	1.96%	461.0	1.59%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-4	-1.026e+01	0.0001	5966.0	28.92%	8026.8	27.67%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-4	-1.019e+01	0.0001	1579.0	7.65%	2013.6	6.94%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-4	-9.698e+00	0.0002	1480.0	7.17%	1886.8	6.51%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-4	-9.585e+00	0.0003	1690.0	8.19%	2170.3	7.48%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-4	-9.506e+00	0.0003	3379.0	16.38%	4472.0	15.42%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-4	-9.438e+00	0.0003	2305.0	11.17%	3005.7	10.36%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-3	-9.180e+00	0.0004	1692.0	8.20%	2178.8	7.51%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-3	-8.829e+00	0.0006	91.0	0.44%	85.1	0.29%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-3	-8.721e+00	0.0006	1802.0	8.73%	2333.5	8.05%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-3	-8.424e+00	0.0008	97.0	0.47%	93.3	0.32%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-3	-8.109e+00	0.0011	228.0	1.11%	253.3	0.87%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-3	-8.072e+00	0.0011	1098.0	5.32%	1393.9	4.81%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-3	-8.034e+00	0.0012	108.0	0.52%	107.1	0.37%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-3	-8.010e+00	0.0012	718.0	3.48%	888.8	3.06%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-3	-7.911e+00	0.0013	576.0	2.79%	702.5	2.42%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-3	-7.852e+00	0.0014	1283.0	6.22%	1644.5	5.67%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-3	-7.650e+00	0.0016	3202.0	15.52%	4263.0	14.70%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-3	-7.314e+00	0.0023	70.0	0.34%	65.5	0.23%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-3	-7.276e+00	0.0024	385.0	1.87%	458.2	1.58%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-3	-7.255e+00	0.0024	364.0	1.76%	431.0	1.49%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-3	-7.206e+00	0.0025	2415.0	11.71%	3192.9	11.01%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-3	-7.103e+00	0.0027	212.0	1.03%	238.9	0.82%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-3	-7.025e+00	0.0029	1628.0	7.89%	2122.5	7.32%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-3	-7.004e+00	0.0030	281.0	1.36%	326.1	1.12%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-2	-6.831e+00	0.0035	434.0	2.10%	525.5	1.81%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-2	-6.749e+00	0.0038	148.0	0.72%	160.1	0.55%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-2	-6.680e+00	0.0040	772.0	3.74%	973.8	3.36%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-2	-6.583e+00	0.0044	178.0	0.86%	198.4	0.68%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-2	-6.580e+00	0.0044	398.0	1.93%	480.3	1.66%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-2	-6.511e+00	0.0046	1229.0	5.96%	1589.4	5.48%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-2	-6.483e+00	0.0047	834.0	4.04%	1058.2	3.65%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-2	-6.352e+00	0.0053	1217.0	5.90%	1575.9	5.43%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-2	-6.294e+00	0.0056	341.0	1.65%	408.3	1.41%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-2	-6.197e+00	0.0061	1002.0	4.86%	1287.7	4.44%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-2	-6.100e+00	0.0067	1966.0	9.53%	2599.0	8.96%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-2	-6.045e+00	0.0070	407.0	1.97%	496.6	1.71%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-2	-5.809e+00	0.0088	1110.0	5.38%	1438.4	4.96%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-2	-5.774e+00	0.0091	1917.0	9.29%	2537.5	8.75%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-2	-5.772e+00	0.0091	727.0	3.52%	923.4	3.18%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-5.719e+00	0.0095	7376.0	35.75%	10108.0	34.85%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-2	-5.642e+00	0.0101	315.0	1.53%	379.2	1.31%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-2	-5.603e+00	0.0105	147.0	0.71%	164.9	0.57%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-2	-5.587e+00	0.0106	382.0	1.85%	467.6	1.61%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-5.559e+00	0.0108	130.0	0.63%	143.3	0.49%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-2	-5.534e+00	0.0110	213.0	1.03%	248.7	0.86%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-2	-5.464e+00	0.0117	353.0	1.71%	430.7	1.49%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-2	-5.416e+00	0.0122	3852.0	18.67%	5211.8	17.97%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-2	-5.328e+00	0.0132	317.0	1.54%	384.3	1.32%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-2	-5.283e+00	0.0137	716.0	3.47%	914.9	3.15%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-2	-5.278e+00	0.0137	2891.0	14.01%	3886.2	13.40%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-2	-5.273e+00	0.0137	645.0	3.13%	819.2	2.82%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-2	-5.203e+00	0.0146	177.0	0.86%	204.8	0.71%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-2	-5.189e+00	0.0147	3579.0	17.35%	4839.7	16.69%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-2	-5.181e+00	0.0147	323.0	1.57%	393.9	1.36%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-2	-5.007e+00	0.0174	382.0	1.85%	472.3	1.63%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-2	-4.979e+00	0.0178	282.0	1.37%	341.6	1.18%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-2	-4.859e+00	0.0199	750.0	3.64%	965.1	3.33%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-2	-4.834e+00	0.0203	1086.0	5.26%	1420.9	4.90%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-2	-4.795e+00	0.0209	1212.0	5.87%	1592.5	5.49%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-2	-4.740e+00	0.0220	1040.0	5.04%	1359.5	4.69%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-2	-4.679e+00	0.0232	1248.0	6.05%	1643.5	5.67%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-2	-4.668e+00	0.0233	1286.0	6.23%	1695.2	5.84%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-1	-4.551e+00	0.0261	2418.0	11.72%	3251.3	11.21%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-4.432e+00	0.0292	150.0	0.73%	174.3	0.60%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-1	-4.398e+00	0.0300	10.0	0.05%	6.2	0.02%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-1	-4.303e+00	0.0328	825.0	4.00%	1074.9	3.71%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-4.265e+00	0.0339	17.0	0.08%	13.3	0.05%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-4.264e+00	0.0339	2772.0	13.44%	3747.3	12.92%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-1	-4.231e+00	0.0346	3794.0	18.39%	5164.1	17.80%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-4.129e+00	0.0381	4179.0	20.26%	5702.1	19.66%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-4.061e+00	0.0405	1226.0	5.94%	1625.0	5.60%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1	-3.728e+00	0.0562	3643.0	17.66%	4970.2	17.14%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-3.711e+00	0.0568	362.0	1.75%	458.3	1.58%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-3.603e+00	0.0629	5407.0	26.21%	7431.2	25.62%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-1	-3.564e+00	0.0651	1803.0	8.74%	2427.1	8.37%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-3.518e+00	0.0677	403.0	1.95%	515.3	1.78%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-3.414e+00	0.0747	213.0	1.03%	263.9	0.91%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-3.400e+00	0.0753	256.0	1.24%	320.5	1.11%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-3.312e+00	0.0818	2453.0	11.89%	3332.6	11.49%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-3.240e+00	0.0874	86.0	0.42%	99.3	0.34%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-3.236e+00	0.0874	522.0	2.53%	679.5	2.34%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-1	-3.179e+00	0.0919	531.0	2.57%	692.3	2.39%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-3.163e+00	0.0929	2054.0	9.96%	2784.4	9.60%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-3.037e+00	0.1047	130.0	0.63%	157.6	0.54%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-3.025e+00	0.1054	146.0	0.71%	178.7	0.62%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-2.987e+00	0.1089	1173.0	5.69%	1573.9	5.43%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-2.930e+00	0.1147	391.0	1.90%	506.5	1.75%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-2.929e+00	0.1147	1857.0	9.00%	2518.7	8.68%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-2.769e+00	0.1332	348.0	1.69%	450.6	1.55%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-1	-2.725e+00	0.1384	24.0	0.12%	24.6	0.08%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-2.704e+00	0.1407	3914.0	18.97%	5384.5	18.56%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-2.601e+00	0.1550	592.0	2.87%	784.7	2.71%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-1	-2.464e+00	0.1769	38.0	0.18%	42.8	0.15%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-1	-2.388e+00	0.1898	99.0	0.48%	121.9	0.42%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-1	-2.363e+00	0.1936	984.0	4.77%	1327.3	4.58%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-2.350e+00	0.1952	634.0	3.07%	846.7	2.92%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-2.332e+00	0.1977	598.0	2.90%	797.3	2.75%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-1	-2.318e+00	0.1995	110.0	0.53%	136.5	0.47%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.299e+00	0.2023	364.0	1.76%	478.1	1.65%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-2.286e+00	0.2039	39.0	0.19%	44.8	0.15%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-2.276e+00	0.2048	748.0	3.63%	1005.0	3.46%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-2.190e+00	0.2220	2233.0	10.82%	3063.4	10.56%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-2.103e+00	0.2412	123.0	0.60%	155.6	0.54%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.091e+00	0.2429	2578.0	12.50%	3547.8	12.23%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-2.001e+00	0.2644	819.0	3.97%	1108.5	3.82%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.974e+00	0.2703	226.0	1.10%	295.7	1.02%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.954e+00	0.2745	892.0	4.32%	1210.1	4.17%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.947e+00	0.2749	2837.0	13.75%	3914.1	13.50%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.928e+00	0.2774	136.0	0.66%	174.1	0.60%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.928e+00	0.2774	136.0	0.66%	174.1	0.60%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.895e+00	0.2855	212.0	1.03%	277.6	0.96%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.892e+00	0.2855	262.0	1.27%	345.2	1.19%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-1.867e+00	0.2906	1239.0	6.01%	1693.2	5.84%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.865e+00	0.2906	658.0	3.19%	889.6	3.07%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.851e+00	0.2926	2892.0	14.02%	3995.4	13.78%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.807e+00	0.3043	64.0	0.31%	79.6	0.27%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.799e+00	0.3053	313.0	1.52%	416.4	1.44%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.782e+00	0.3092	468.0	2.27%	629.9	2.17%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.704e+00	0.3328	1459.0	7.07%	2004.1	6.91%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.698e+00	0.3332	1958.0	9.49%	2699.2	9.31%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.685e+00	0.3360	550.0	2.67%	744.4	2.57%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.641e+00	0.3496	25.0	0.12%	29.9	0.10%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.636e+00	0.3496	330.0	1.60%	442.8	1.53%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.623e+00	0.3528	3134.0	15.19%	4344.8	14.98%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.612e+00	0.3551	1010.0	4.90%	1383.3	4.77%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.574e+00	0.3672	359.0	1.74%	483.8	1.67%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-1.539e+00	0.3784	5905.0	28.62%	8229.7	28.37%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.512e+00	0.3869	198.0	0.96%	263.3	0.91%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.491e+00	0.3936	66.0	0.32%	84.2	0.29%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.486e+00	0.3937	642.0	3.11%	877.0	3.02%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.484e+00	0.3937	156.0	0.76%	206.7	0.71%
3-TVTGTGTRCACACAB	TVTGTGTRCACACAB	1e0	-1.446e+00	0.4063	889.0	4.31%	1220.1	4.21%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.426e+00	0.4125	312.0	1.51%	422.0	1.45%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.396e+00	0.4232	862.0	4.18%	1184.5	4.08%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.375e+00	0.4305	2006.0	9.72%	2780.3	9.59%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.355e+00	0.4374	146.0	0.71%	194.7	0.67%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.307e+00	0.4568	537.0	2.60%	735.8	2.54%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.291e+00	0.4624	1938.0	9.39%	2689.5	9.27%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.242e+00	0.4834	2198.0	10.65%	3055.4	10.53%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.189e+00	0.5075	132.0	0.64%	177.5	0.61%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.184e+00	0.5079	462.0	2.24%	634.5	2.19%
2-CAGCACCDYGGACAG	CAGCACCDYGGACAG	1e0	-1.128e+00	0.5349	11.0	0.05%	14.0	0.05%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.112e+00	0.5410	65.0	0.32%	86.3	0.30%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.079e+00	0.5570	3043.0	14.75%	4248.0	14.65%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.052e+00	0.5698	140.0	0.68%	190.6	0.66%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-1.050e+00	0.5698	1882.0	9.12%	2623.2	9.04%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.003e+00	0.5939	908.0	4.40%	1262.9	4.35%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-9.774e-01	0.6067	260.0	1.26%	358.5	1.24%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-9.708e-01	0.6082	427.0	2.07%	591.6	2.04%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-9.313e-01	0.6302	351.0	1.70%	486.9	1.68%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-9.267e-01	0.6305	163.0	0.79%	224.8	0.78%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-9.132e-01	0.6365	7174.0	34.77%	10061.2	34.69%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-8.951e-01	0.6455	1681.0	8.15%	2350.5	8.10%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-8.809e-01	0.6522	1229.0	5.96%	1717.3	5.92%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-8.766e-01	0.6524	400.0	1.94%	556.5	1.92%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-8.680e-01	0.6554	2607.0	12.64%	3651.3	12.59%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-8.221e-01	0.6835	2121.0	10.28%	2972.4	10.25%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-7.941e-01	0.7001	1074.0	5.21%	1504.8	5.19%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.788e-01	0.7082	1129.0	5.47%	1582.9	5.46%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-7.615e-01	0.7177	1510.0	7.32%	2118.9	7.31%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-7.241e-01	0.7421	309.0	1.50%	433.7	1.50%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-7.032e-01	0.7549	1173.0	5.69%	1648.0	5.68%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-6.649e-01	0.7814	3321.0	16.10%	4672.0	16.11%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-6.601e-01	0.7821	422.0	2.05%	594.6	2.05%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-6.574e-01	0.7821	4528.0	21.95%	6369.5	21.96%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-6.488e-01	0.7850	524.0	2.54%	738.2	2.55%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-6.387e-01	0.7899	15.0	0.07%	21.4	0.07%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-6.220e-01	0.8002	10.0	0.05%	14.2	0.05%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-5.937e-01	0.8201	506.0	2.45%	715.8	2.47%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-5.933e-01	0.8201	760.0	3.68%	1073.6	3.70%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-5.813e-01	0.8241	2191.0	10.62%	3089.3	10.65%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-5.517e-01	0.8457	448.0	2.17%	635.6	2.19%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.445e-01	0.8487	112.0	0.54%	160.3	0.55%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-5.266e-01	0.8609	1592.0	7.72%	2250.5	7.76%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-5.157e-01	0.8671	922.0	4.47%	1306.1	4.50%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-5.010e-01	0.8767	112.0	0.54%	161.8	0.56%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-4.879e-01	0.8850	743.0	3.60%	1055.9	3.64%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-4.253e-01	0.9388	570.0	2.76%	814.5	2.81%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-4.109e-01	0.9489	2583.0	12.52%	3659.1	12.62%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.094e-01	0.9489	327.0	1.59%	470.7	1.62%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-4.065e-01	0.9489	43.0	0.21%	64.3	0.22%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-3.993e-01	0.9497	1661.0	8.05%	2359.5	8.14%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-3.949e-01	0.9505	2172.0	10.53%	3081.2	10.62%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-3.935e-01	0.9505	606.0	2.94%	867.2	2.99%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-3.774e-01	0.9604	3430.0	16.63%	4858.6	16.75%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-3.741e-01	0.9604	823.0	3.99%	1176.0	4.05%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.686e-01	0.9620	810.0	3.93%	1158.4	3.99%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-3.678e-01	0.9620	393.0	1.90%	566.3	1.95%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-3.609e-01	0.9627	193.0	0.94%	281.8	0.97%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-3.602e-01	0.9627	319.0	1.55%	461.4	1.59%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-3.537e-01	0.9629	1555.0	7.54%	2214.6	7.64%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-3.313e-01	0.9814	241.0	1.17%	351.5	1.21%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-3.302e-01	0.9814	617.0	2.99%	888.0	3.06%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.249e-01	0.9814	1153.0	5.59%	1648.2	5.68%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-3.181e-01	0.9842	1579.0	7.65%	2252.4	7.77%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-3.100e-01	0.9888	970.0	4.70%	1390.9	4.80%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-3.089e-01	0.9888	91.0	0.44%	136.4	0.47%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-3.046e-01	0.9888	9.0	0.04%	15.5	0.05%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-3.034e-01	0.9888	84.0	0.41%	126.1	0.43%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-3.009e-01	0.9888	825.0	4.00%	1185.1	4.09%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-2.967e-01	0.9888	855.0	4.14%	1228.8	4.24%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-2.957e-01	0.9888	110.0	0.53%	164.1	0.57%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.930e-01	0.9888	24.0	0.12%	38.2	0.13%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-2.799e-01	0.9919	2972.0	14.41%	4227.4	14.58%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.690e-01	0.9994	409.0	1.98%	595.9	2.05%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-2.644e-01	1.0000	62.0	0.30%	95.2	0.33%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-2.186e-01	1.0000	548.0	2.66%	798.5	2.75%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-2.123e-01	1.0000	801.0	3.88%	1160.7	4.00%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.058e-01	1.0000	1373.0	6.66%	1975.2	6.81%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.907e-01	1.0000	41.0	0.20%	66.0	0.23%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.876e-01	1.0000	1217.0	5.90%	1756.6	6.06%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.836e-01	1.0000	2774.0	13.45%	3966.2	13.67%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-1.657e-01	1.0000	1998.0	9.68%	2870.3	9.90%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.634e-01	1.0000	1823.0	8.84%	2622.8	9.04%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.622e-01	1.0000	1989.0	9.64%	2858.6	9.86%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.398e-01	1.0000	3066.0	14.86%	4391.7	15.14%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.376e-01	1.0000	1229.0	5.96%	1782.3	6.15%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-1.343e-01	1.0000	2173.0	10.53%	3126.3	10.78%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.289e-01	1.0000	199.0	0.96%	303.1	1.04%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.263e-01	1.0000	3784.0	18.34%	5412.0	18.66%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.152e-01	1.0000	1206.0	5.85%	1754.3	6.05%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-1.145e-01	1.0000	2098.0	10.17%	3025.0	10.43%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.126e-01	1.0000	1523.0	7.38%	2207.8	7.61%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-1.012e-01	1.0000	1133.0	5.49%	1653.4	5.70%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-9.866e-02	1.0000	2214.0	10.73%	3195.7	11.02%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-8.952e-02	1.0000	631.0	3.06%	935.9	3.23%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-7.531e-02	1.0000	135.0	0.65%	214.2	0.74%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-7.185e-02	1.0000	1582.0	7.67%	2304.3	7.94%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-6.675e-02	1.0000	1568.0	7.60%	2286.6	7.88%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-6.551e-02	1.0000	699.0	3.39%	1039.0	3.58%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-5.608e-02	1.0000	120.0	0.58%	194.8	0.67%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-5.488e-02	1.0000	647.0	3.14%	967.2	3.33%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-5.161e-02	1.0000	1289.0	6.25%	1893.1	6.53%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-4.076e-02	1.0000	1019.0	4.94%	1510.2	5.21%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-3.517e-02	1.0000	259.0	1.26%	406.4	1.40%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-2.869e-02	1.0000	1448.0	7.02%	2135.8	7.36%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.114e-02	1.0000	828.0	4.01%	1246.1	4.30%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.911e-02	1.0000	177.0	0.86%	289.6	1.00%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.801e-02	1.0000	520.0	2.52%	799.4	2.76%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.551e-02	1.0000	503.0	2.44%	776.2	2.68%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-1.264e-02	1.0000	576.0	2.79%	886.4	3.06%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.056e-02	1.0000	499.0	2.42%	775.2	2.67%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-9.728e-03	1.0000	180.0	0.87%	299.2	1.03%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-7.603e-03	1.0000	116.0	0.56%	202.2	0.70%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-4.694e-03	1.0000	537.0	2.60%	841.1	2.90%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-4.288e-03	1.0000	1032.0	5.00%	1569.2	5.41%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-2.385e-03	1.0000	207.0	1.00%	351.4	1.21%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-1.922e-03	1.0000	75.0	0.36%	144.5	0.50%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.683e-03	1.0000	435.0	2.11%	700.2	2.41%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.238e-03	1.0000	935.0	4.53%	1445.3	4.98%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-9.460e-04	1.0000	1006.0	4.88%	1553.6	5.36%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-5.660e-04	1.0000	413.0	2.00%	677.2	2.33%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.310e-04	1.0000	35.0	0.17%	81.9	0.28%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-5.100e-04	1.0000	365.0	1.77%	605.9	2.09%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-3.430e-04	1.0000	25.0	0.12%	64.5	0.22%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-3.140e-04	1.0000	407.0	1.97%	673.9	2.32%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-9.600e-05	1.0000	688.0	3.33%	1108.0	3.82%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-6.800e-05	1.0000	356.0	1.73%	607.6	2.10%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-5.500e-05	1.0000	119.0	0.58%	233.1	0.80%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.100e-05	1.0000	3901.0	18.91%	5825.8	20.09%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.000e-05	1.0000	537.0	2.60%	900.8	3.11%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-2.000e-06	1.0000	435.0	2.11%	756.1	2.61%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.000e-06	1.0000	574.0	2.78%	972.3	3.35%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.000e-06	1.0000	686.0	3.33%	1151.8	3.97%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-0.000e+00	1.0000	1976.0	9.58%	3081.2	10.62%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	153.0	0.74%	314.4	1.08%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-0.000e+00	1.0000	1584.0	7.68%	2511.1	8.66%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-0.000e+00	1.0000	2618.0	12.69%	4039.6	13.93%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-0.000e+00	1.0000	2386.0	11.57%	3716.0	12.81%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-0.000e+00	1.0000	358.0	1.74%	662.1	2.28%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-0.000e+00	1.0000	3602.0	17.46%	5505.4	18.98%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-0.000e+00	1.0000	9581.0	46.44%	14042.5	48.42%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-0.000e+00	1.0000	745.0	3.61%	1279.6	4.41%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-0.000e+00	1.0000	947.0	4.59%	1600.8	5.52%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-0.000e+00	1.0000	211.0	1.02%	443.1	1.53%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-0.000e+00	1.0000	1787.0	8.66%	2896.7	9.99%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-0.000e+00	1.0000	1195.0	5.79%	2028.0	6.99%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	5896.0	28.58%	8936.8	30.81%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-0.000e+00	1.0000	233.0	1.13%	518.9	1.79%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-0.000e+00	1.0000	767.0	3.72%	1416.5	4.88%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-0.000e+00	1.0000	140.0	0.68%	364.0	1.25%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	4444.0	21.54%	8026.4	27.67%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	0.000e+00	1.0000	2642.0	12.81%	4350.5	15.00%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	5099.0	24.72%	8467.9	29.20%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	1278.0	6.19%	2312.7	7.97%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	2663.0	12.91%	5511.9	19.00%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	0.000e+00	1.0000	4233.0	20.52%	6708.3	23.13%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	162.0	0.79%	553.7	1.91%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	988.0	4.79%	2249.4	7.76%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	0.000e+00	1.0000	1933.0	9.37%	3527.7	12.16%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	1078.0	5.23%	2524.0	8.70%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	3978.0	19.28%	6487.2	22.37%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	0.000e+00	1.0000	4464.0	21.64%	7051.6	24.31%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	0.000e+00	1.0000	4717.0	22.86%	7600.4	26.20%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	0.000e+00	1.0000	2396.0	11.61%	3967.5	13.68%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	0.000e+00	1.0000	5556.0	26.93%	9030.7	31.14%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	0.000e+00	1.0000	189.0	0.92%	490.2	1.69%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	0.000e+00	1.0000	2778.0	13.47%	4673.2	16.11%