Information for 6-CCGCAGAG (Motif 6)

A G T C G T A C A T C G G A T C C G T A A C T G C G T A C A T G
Reverse Opposite:
G T A C A C G T A G T C C G A T C T A G T A G C C A T G C T A G
p-value:1e-161
log p-value:-3.727e+02
Information Content per bp:1.811
Number of Target Sequences with motif3499.0
Percentage of Target Sequences with motif16.96%
Number of Background Sequences with motif3099.1
Percentage of Background Sequences with motif10.69%
Average Position of motif in Targets99.7 +/- 57.4bp
Average Position of motif in Background98.3 +/- 58.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCGCAGAG-
CCTGCTGAGH
 A C G T A G T C G T A C A T C G G A T C C G T A A C T G C G T A C A T G A C G T
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

RUNX3/MA0684.1/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCGCAGAG
AAACCGCAAA-
 A C G T A C G T A C G T A G T C G T A C A T C G G A T C C G T A A C T G C G T A C A T G
G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCGCAGAG
AAACCACAGAN
 A C G T A C G T A C G T A G T C G T A C A T C G G A T C C G T A A C T G C G T A C A T G
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CCGCAGAG-
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A T C G G A T C C G T A A C T G C G T A C A T G A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCGCAGAG--
GTCCCCAGGGGA
 A C G T A C G T A G T C G T A C A T C G G A T C C G T A A C T G C G T A C A T G A C G T A C G T
C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCGCAGAG----
--CCAGACRSVB
 A G T C G T A C A T C G G A T C C G T A A C T G C G T A C A T G A C G T A C G T A C G T A C G T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

RUNX2/MA0511.2/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCGCAGAG
AAACCGCAA--
 A C G T A C G T A C G T A G T C G T A C A T C G G A T C C G T A A C T G C G T A C A T G
G C T A C T G A G T C A A G T C A G T C C T A G A G T C T G C A T C G A A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCGCAGAG--
CACAGCAGGGGG
 A C G T A C G T A G T C G T A C A T C G G A T C C G T A A C T G C G T A C A T G A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCGCAGAG
TTCCKNAGAA
 A C G T A C G T A G T C G T A C A T C G G A T C C G T A A C T G C G T A C A T G
G A C T C A G T G A T C G A T C A C G T G A T C C T G A T A C G C G T A G T C A

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCGCAGAG
-CACAGN-
 A G T C G T A C A T C G G A T C C G T A A C T G C G T A C A T G
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T