Information for 5-GCCAATVG (Motif 4)

C T A G A T G C T G A C C G T A G T C A C G A T T A G C C T A G
Reverse Opposite:
A G T C A T C G G C T A A C G T A C G T A C T G T A C G G A T C
p-value:1e-236
log p-value:-5.440e+02
Information Content per bp:1.706
Number of Target Sequences with motif9774.0
Percentage of Target Sequences with motif47.38%
Number of Background Sequences with motif10497.8
Percentage of Background Sequences with motif36.19%
Average Position of motif in Targets100.1 +/- 57.2bp
Average Position of motif in Background99.4 +/- 58.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-GCCAATVG-
AGCCAATCGG
 A C G T C T A G A T G C T G A C C G T A G T C A C G A T T A G C C T A G A C G T
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.83
Offset:-4
Orientation:forward strand
Alignment:----GCCAATVG
ACTAGCCAATCA
 A C G T A C G T A C G T A C G T C T A G A T G C T G A C C G T A G T C A C G A T T A G C C T A G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GCCAATVG
TGCCAA---
 A C G T C T A G A T G C T G A C C G T A G T C A C G A T T A G C C T A G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---GCCAATVG
CGTGCCAAG--
 A C G T A C G T A C G T C T A G A T G C T G A C C G T A G T C A C G A T T A G C C T A G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:5
Score:0.75
Offset:-6
Orientation:forward strand
Alignment:------GCCAATVG-
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A T G C T G A C C G T A G T C A C G A T T A G C C T A G A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GCCAATVG
GGTGCCAAGT-
 A C G T A C G T A C G T C T A G A T G C T G A C C G T A G T C A C G A T T A G C C T A G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GCCAATVG-------
TGGACCAATCAGCACTCT
 A C G T A C G T A C G T C T A G A T G C T G A C C G T A G T C A C G A T T A G C C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GCCAATVG
RACAAWGG
 C T A G A T G C T G A C C G T A G T C A C G A T T A G C C T A G
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Sox17/MA0078.1/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GCCAATVG-
GACAATGNN
 C T A G A T G C T G A C C G T A G T C A C G A T T A G C C T A G A C G T
T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

SOX9/MA0077.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCCAATVG
GAACAATGG
 A C G T C T A G A T G C T G A C C G T A G T C A C G A T T A G C C T A G
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G