/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77374/A77374.CBTEAANXX_2.bam Tue.Oct.31.17.18.47.PDT.2017-bioqc01
35435406 + 2813310 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
513071 + 39555 duplicates
34507272 + 1990889 mapped (97.38% : 70.77%)
35435406 + 2813310 paired in sequencing
17717703 + 1406655 read1
17717703 + 1406655 read2
34242363 + 1935896 properly paired (96.63% : 68.81%)
34317222 + 1939484 with itself and mate mapped
190050 + 51405 singletons (0.54% : 1.83%)
24899 + 1963 with mate mapped to a different chr
3033 + 512 with mate mapped to a different chr (mapQ>=5)
e1da0e1117fdae65f93e902b7391601f  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77374/A77374.CBTEAANXX_2.bam Tue.Oct.31.17.19.30.PDT.2017-bioqc01