/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77369/A77369.CBTEAANXX_2.bam Tue.Oct.31.15.39.45.PDT.2017-bioqc01
33988854 + 2597940 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
654567 + 43537 duplicates
32705151 + 1871427 mapped (96.22% : 72.04%)
33988854 + 2597940 paired in sequencing
16994427 + 1298970 read1
16994427 + 1298970 read2
32289220 + 1814217 properly paired (95.00% : 69.83%)
32479860 + 1821857 with itself and mate mapped
225291 + 49570 singletons (0.66% : 1.91%)
34231 + 2319 with mate mapped to a different chr
5511 + 620 with mate mapped to a different chr (mapQ>=5)
b1717f0856bb1b34178d8c5647667141  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77369/A77369.CBTEAANXX_2.bam Tue.Oct.31.15.40.28.PDT.2017-bioqc01