/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77368/A77368.CBTEAANXX_2.bam Tue.Oct.31.15.11.08.PDT.2017-bioqc01
19798334 + 1563426 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
328146 + 22189 duplicates
19042887 + 1102588 mapped (96.18% : 70.52%)
19798334 + 1563426 paired in sequencing
9899167 + 781713 read1
9899167 + 781713 read2
18793680 + 1067582 properly paired (94.93% : 68.28%)
18915302 + 1072560 with itself and mate mapped
127585 + 30028 singletons (0.64% : 1.92%)
21092 + 1418 with mate mapped to a different chr
4466 + 357 with mate mapped to a different chr (mapQ>=5)
7d3223012c855291e150faba346203fe  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77368/A77368.CBTEAANXX_2.bam Tue.Oct.31.15.11.32.PDT.2017-bioqc01