INFO: SVN version, compile time, version >>> $Id: FindER_1_0_0.java 127368 2017-02-15 23:46:04Z mbilenky $	v 1.0.1e
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#
# v 1.0.1e (beta), February 15, 2017 : Please report problems to:  mbilenky@bcgsc.ca
#
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INFO: SVN version, compile time >>> $Id: BAMReader_1_0_0.java 125718 2016-12-06 04:23:24Z mbilenky $
INFO: analyzing bam file >>> /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam
INFO: using samtools >>> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools
INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -h /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam
INFO: generated chromosome length map for 84 chromosomes
INFO: read length 75 bp
INFO: SVN version, compile time >>> $Id: BAMReader_1_0_0.java 125718 2016-12-06 04:23:24Z mbilenky $
INFO: analyzing bam file >>> /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam
INFO: using samtools >>> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools
INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -h /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam
INFO: generated chromosome length map for 84 chromosomes
INFO: read length 75 bp
INFO: no external blacklisting.
INFO: outputting enriched regions (ER) into /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/FindER.1.0.1e-A77367.CBTEAANXX_2.v.A77371/A77367.CBTEAANXX_2.vs.A77371.CBTEAANXX_2.FDR_0.05

INFO: profiling region >>> GL000199.1:1-169874
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000199.1:1-169874
. 3566 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000199.1:1-169874
. 5742 fragments are accepted.
INFO: generating distance distribution between fragment starts ... INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view  -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000199.1:1-169874
 inferred bin size 110 (bp). [will be used to bin 'signal' and 'input']


WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000219.1:1-179198
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000219.1:1-179198
. 1731 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000219.1:1-179198
. 2684 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000217.1:1-172149
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000217.1:1-172149
. 176 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000217.1:1-172149
. 269 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000191.1:1-106433
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000191.1:1-106433
. 96 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000191.1:1-106433
. 147 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000193.1:1-189789
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000193.1:1-189789
. 1406 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000193.1:1-189789
. 2201 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000195.1:1-182896
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000195.1:1-182896
. 2191 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000195.1:1-182896
. 4140 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000197.1:1-37175
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000197.1:1-37175
 0 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000197.1:1-37175
. 6 fragments are accepted.

INFO: profiling region >>> GL000230.1:1-43691
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000230.1:1-43691
. 184 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000230.1:1-43691
. 306 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000236.1:1-41934
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000236.1:1-41934
. 8 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000236.1:1-41934
. 17 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000211.1:1-166566
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000211.1:1-166566
. 525 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000211.1:1-166566
. 965 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000232.1:1-40652
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000232.1:1-40652
. 853 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000232.1:1-40652
. 1303 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000238.1:1-39939
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000238.1:1-39939
. 29 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000238.1:1-39939
. 44 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000215.1:1-172545
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000215.1:1-172545
. 30 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000215.1:1-172545
. 53 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> 10:1-135534747
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 10:1-135534747
. 489631 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 10:1-135534747
.. 926017 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 7456 [total length = 5375776 (bp), fraction of region length = 0.039663] with fraction of all sequences found in enriched regions = 0.061331

INFO: profiling region >>> GL000234.1:1-40531
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000234.1:1-40531
. 668 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000234.1:1-40531
. 1080 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000213.1:1-164239
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000213.1:1-164239
. 56 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000213.1:1-164239
. 87 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> 11:1-135006516
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 11:1-135006516
. 461848 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 11:1-135006516
.. 878625 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 6687 [total length = 1611567 (bp), fraction of region length = 0.011937] with fraction of all sequences found in enriched regions = 0.027046

INFO: profiling region >>> 12:1-133851895
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 12:1-133851895
. 444008 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 12:1-133851895
.. 870901 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 7277 [total length = 1608217 (bp), fraction of region length = 0.012015] with fraction of all sequences found in enriched regions = 0.027620

INFO: profiling region >>> GL000209.1:1-159169
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000209.1:1-159169
. 144 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000209.1:1-159169
. 249 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> 13:1-115169878
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 13:1-115169878
. 292261 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 13:1-115169878
.. 567986 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> 14:1-107349540
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 14:1-107349540
. 302697 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 14:1-107349540
.. 584832 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 4588 [total length = 1013948 (bp), fraction of region length = 0.009445] with fraction of all sequences found in enriched regions = 0.025662

INFO: profiling region >>> GL000207.1:1-4262
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000207.1:1-4262
. 16 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000207.1:1-4262
. 34 fragments are accepted.
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000228.1:1-129120
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000228.1:1-129120
. 487 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000228.1:1-129120
. 596 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> 15:1-102531392
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 15:1-102531392
. 296852 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 15:1-102531392
.. 574072 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 4521 [total length = 1270401 (bp), fraction of region length = 0.012390] with fraction of all sequences found in enriched regions = 0.027961

INFO: profiling region >>> 16:1-90354753
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 16:1-90354753
. 317803 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 16:1-90354753
.. 595776 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 4438 [total length = 1069558 (bp), fraction of region length = 0.011837] with fraction of all sequences found in enriched regions = 0.040961

INFO: profiling region >>> 17:1-81195210
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 17:1-81195210
. 320899 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 17:1-81195210
.. 618204 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 4394 [total length = 839254 (bp), fraction of region length = 0.010336] with fraction of all sequences found in enriched regions = 0.030313

INFO: profiling region >>> 18:1-78077248
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 18:1-78077248
. 253589 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 18:1-78077248
. 477250 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 3389 [total length = 748969 (bp), fraction of region length = 0.009593] with fraction of all sequences found in enriched regions = 0.029412

INFO: profiling region >>> MT:1-16569
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam MT:1-16569
. 57 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam MT:1-16569
. 442 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> 19:1-59128983
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 19:1-59128983
. 252152 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 19:1-59128983
. 467752 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 3022 [total length = 728302 (bp), fraction of region length = 0.012317] with fraction of all sequences found in enriched regions = 0.034292

INFO: profiling region >>> 1:1-249250621
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 1:1-249250621
.. 811572 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 1:1-249250621
.... 1571853 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 13341 [total length = 2948361 (bp), fraction of region length = 0.011829] with fraction of all sequences found in enriched regions = 0.041196

INFO: profiling region >>> 2:1-243199373
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 2:1-243199373
.. 773303 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 2:1-243199373
.... 1514940 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 13104 [total length = 3158064 (bp), fraction of region length = 0.012985] with fraction of all sequences found in enriched regions = 0.032916

INFO: profiling region >>> 3:1-198022430
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 3:1-198022430
.. 619918 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 3:1-198022430
... 1219740 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 9593 [total length = 5573533 (bp), fraction of region length = 0.028146] with fraction of all sequences found in enriched regions = 0.025305

INFO: profiling region >>> GL000241.1:1-42152
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000241.1:1-42152
. 560 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000241.1:1-42152
. 1013 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> 4:1-191154276
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 4:1-191154276
.. 563093 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 4:1-191154276
... 1106220 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 10478 [total length = 4096898 (bp), fraction of region length = 0.021432] with fraction of all sequences found in enriched regions = 0.036519

INFO: profiling region >>> 5:1-180915260
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 5:1-180915260
.. 559284 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 5:1-180915260
... 1089013 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 10541 [total length = 2329561 (bp), fraction of region length = 0.012877] with fraction of all sequences found in enriched regions = 0.030113

INFO: profiling region >>> 6:1-171115067
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 6:1-171115067
.. 540911 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 6:1-171115067
... 1065439 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 9494 [total length = 2098174 (bp), fraction of region length = 0.012262] with fraction of all sequences found in enriched regions = 0.035659

INFO: profiling region >>> 7:1-159138663
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 7:1-159138663
.. 510761 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 7:1-159138663
... 984427 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 8166 [total length = 1804686 (bp), fraction of region length = 0.011340] with fraction of all sequences found in enriched regions = 0.033762

INFO: profiling region >>> 8:1-146364022
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 8:1-146364022
. 461810 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 8:1-146364022
.. 894602 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 7583 [total length = 1675843 (bp), fraction of region length = 0.011450] with fraction of all sequences found in enriched regions = 0.028082

INFO: profiling region >>> 9:1-141213431
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 9:1-141213431
. 393238 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 9:1-141213431
.. 753486 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 6056 [total length = 1156696 (bp), fraction of region length = 0.008191] with fraction of all sequences found in enriched regions = 0.028866

INFO: profiling region >>> GL000201.1:1-36148
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000201.1:1-36148
. 2 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000201.1:1-36148
. 8 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000247.1:1-36422
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000247.1:1-36422
. 32 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000247.1:1-36422
. 79 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000222.1:1-186861
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000222.1:1-186861
. 201 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000222.1:1-186861
. 327 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000249.1:1-38502
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000249.1:1-38502
. 1 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000249.1:1-38502
. 5 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000220.1:1-161802
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000220.1:1-161802
. 24307 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000220.1:1-161802
. 37078 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000226.1:1-15008
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000226.1:1-15008
. 1238 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000226.1:1-15008
. 1657 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000243.1:1-43341
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000243.1:1-43341
. 57 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000243.1:1-43341
. 101 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000205.1:1-174588
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000205.1:1-174588
. 2317 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000205.1:1-174588
. 3801 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> 20:1-63025520
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 20:1-63025520
. 241129 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 20:1-63025520
. 454227 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 3172 [total length = 859612 (bp), fraction of region length = 0.013639] with fraction of all sequences found in enriched regions = 0.025767

INFO: profiling region >>> 21:1-48129895
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 21:1-48129895
. 132054 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 21:1-48129895
. 247509 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 2675 [total length = 644675 (bp), fraction of region length = 0.013394] with fraction of all sequences found in enriched regions = 0.058003

INFO: profiling region >>> GL000245.1:1-36651
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000245.1:1-36651
. 11 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000245.1:1-36651
. 25 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000203.1:1-37498
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000203.1:1-37498
. 73 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000203.1:1-37498
. 106 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000224.1:1-179693
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000224.1:1-179693
. 2761 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000224.1:1-179693
. 4145 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 63 [total length = 17703 (bp), fraction of region length = 0.098518] with fraction of all sequences found in enriched regions = 0.331140

INFO: profiling region >>> 22:1-51304566
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam 22:1-51304566
. 151555 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam 22:1-51304566
. 278648 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 2173 [total length = 371583 (bp), fraction of region length = 0.007243] with fraction of all sequences found in enriched regions = 0.030203

INFO: profiling region >>> GL000198.1:1-90085
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000198.1:1-90085
. 888 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000198.1:1-90085
. 1326 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000218.1:1-161147
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000218.1:1-161147
. 801 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000218.1:1-161147
. 1347 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000239.1:1-33824
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000239.1:1-33824
. 43 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000239.1:1-33824
. 56 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000192.1:1-547496
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000192.1:1-547496
. 884 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000192.1:1-547496
. 1771 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000194.1:1-191469
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000194.1:1-191469
. 1206 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000194.1:1-191469
. 1923 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000196.1:1-38914
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000196.1:1-38914
. 2 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000196.1:1-38914
. 16 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> X:1-155270560
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam X:1-155270560
. 238576 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam X:1-155270560
. 460102 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000235.1:1-34474
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000235.1:1-34474
. 257 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000235.1:1-34474
. 469 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000212.1:1-186858
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000212.1:1-186858
. 1418 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000212.1:1-186858
. 2263 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> Y:1-59373566
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam Y:1-59373566
. 36929 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam Y:1-59373566
. 67555 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000210.1:1-27682
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000210.1:1-27682
. 15 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000210.1:1-27682
. 25 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000237.1:1-45867
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000237.1:1-45867
. 332 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000237.1:1-45867
. 543 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000231.1:1-27386
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000231.1:1-27386
. 311 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000231.1:1-27386
. 474 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000216.1:1-172294
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000216.1:1-172294
. 3804 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000216.1:1-172294
. 6917 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 34 [total length = 33694 (bp), fraction of region length = 0.195561] with fraction of all sequences found in enriched regions = 0.313679

INFO: profiling region >>> GL000233.1:1-45941
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000233.1:1-45941
. 181 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000233.1:1-45941
. 260 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000214.1:1-137718
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000214.1:1-137718
. 2734 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000214.1:1-137718
. 4110 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 40 [total length = 16440 (bp), fraction of region length = 0.119374] with fraction of all sequences found in enriched regions = 0.230052

INFO: profiling region >>> GL000208.1:1-92689
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000208.1:1-92689
. 1537 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000208.1:1-92689
. 2497 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000229.1:1-19913
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000229.1:1-19913
. 222 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000229.1:1-19913
. 435 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000206.1:1-41001
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000206.1:1-41001
. 16 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000206.1:1-41001
. 30 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000240.1:1-41933
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000240.1:1-41933
. 104 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000240.1:1-41933
. 195 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000246.1:1-38154
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000246.1:1-38154
. 21 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000246.1:1-38154
. 40 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000223.1:1-180455
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000223.1:1-180455
. 9 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000223.1:1-180455
. 21 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000200.1:1-187035
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000200.1:1-187035
 0 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000200.1:1-187035
 0 fragments are accepted.

INFO: profiling region >>> GL000248.1:1-39786
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000248.1:1-39786
. 10 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000248.1:1-39786
. 25 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000221.1:1-155397
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000221.1:1-155397
. 183 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000221.1:1-155397
. 332 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000242.1:1-43523
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000242.1:1-43523
. 5 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000242.1:1-43523
. 8 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000204.1:1-81310
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000204.1:1-81310
. 246 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000204.1:1-81310
. 405 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000227.1:1-128374
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000227.1:1-128374
. 23 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000227.1:1-128374
. 56 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000244.1:1-39929
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000244.1:1-39929
. 6 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000244.1:1-39929
. 17 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000202.1:1-40103
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000202.1:1-40103
. 83 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000202.1:1-40103
. 142 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000225.1:1-211173
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam GL000225.1:1-211173
. 6869 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam GL000225.1:1-211173
. 9368 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...
INFO: Finished OK