/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam Tue.Oct.31.14.43.51.PDT.2017-bioqc01
19903908 + 1574822 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
296888 + 23146 duplicates
19230717 + 1137999 mapped (96.62% : 72.26%)
19903908 + 1574822 paired in sequencing
9951954 + 787411 read1
9951954 + 787411 read2
18988749 + 1101856 properly paired (95.40% : 69.97%)
19107839 + 1106636 with itself and mate mapped
122878 + 31363 singletons (0.62% : 1.99%)
18116 + 1228 with mate mapped to a different chr
2499 + 315 with mate mapped to a different chr (mapQ>=5)
24254c86a3990a52f5e05222133b51a9  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77367/A77367.CBTEAANXX_2.bam Tue.Oct.31.14.44.16.PDT.2017-bioqc01