/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/A77366.CBTEAANXX_2.bam Mon.Oct.30.14.56.44.PDT.2017-bioqc01
42938156 + 3602484 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
1267912 + 86939 duplicates
40983568 + 2472188 mapped (95.45% : 68.62%)
42938156 + 3602484 paired in sequencing
21469078 + 1801242 read1
21469078 + 1801242 read2
40347481 + 2375196 properly paired (93.97% : 65.93%)
40713930 + 2391044 with itself and mate mapped
269638 + 81144 singletons (0.63% : 2.25%)
92822 + 5604 with mate mapped to a different chr
56674 + 2880 with mate mapped to a different chr (mapQ>=5)
7399c497737fa1ed5e12a64a7c3c19cd  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/A77366.CBTEAANXX_2.bam Mon.Oct.30.14.57.36.PDT.2017-bioqc01