/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77364/A77364.CBTEAANXX_2.bam Tue.Oct.31.14.07.41.PDT.2017-bioqc01
38818610 + 3303754 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
815846 + 76850 duplicates
37691134 + 2285391 mapped (97.10% : 69.18%)
38818610 + 3303754 paired in sequencing
19409305 + 1651877 read1
19409305 + 1651877 read2
36937157 + 2192866 properly paired (95.15% : 66.37%)
37478915 + 2215680 with itself and mate mapped
212219 + 69711 singletons (0.55% : 2.11%)
40543 + 2953 with mate mapped to a different chr
8121 + 975 with mate mapped to a different chr (mapQ>=5)
19aa5454e401fa14cd8598fa47531902  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77364/A77364.CBTEAANXX_2.bam Tue.Oct.31.14.08.29.PDT.2017-bioqc01