/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77359/A77359.CBTEAANXX_2.bam Tue.Oct.31.12.40.06.PDT.2017-bioqc01
36245760 + 3074866 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
668244 + 49462 duplicates
34932661 + 2129882 mapped (96.38% : 69.27%)
36245760 + 3074866 paired in sequencing
18122880 + 1537433 read1
18122880 + 1537433 read2
34543317 + 2068092 properly paired (95.30% : 67.26%)
34709038 + 2075564 with itself and mate mapped
223623 + 54318 singletons (0.62% : 1.77%)
33502 + 2496 with mate mapped to a different chr
4852 + 741 with mate mapped to a different chr (mapQ>=5)
d5fb946364a41a3a99f0134a3a563593  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77359/A77359.CBTEAANXX_2.bam Tue.Oct.31.12.40.51.PDT.2017-bioqc01