/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77358/A77358.CBTEAANXX_2.bam Tue.Oct.31.12.09.59.PDT.2017-bioqc01
20502754 + 1656908 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
324967 + 22763 duplicates
19710668 + 1152995 mapped (96.14% : 69.59%)
20502754 + 1656908 paired in sequencing
10251377 + 828454 read1
10251377 + 828454 read2
19471263 + 1118342 properly paired (94.97% : 67.50%)
19578959 + 1122880 with itself and mate mapped
131709 + 30115 singletons (0.64% : 1.82%)
21124 + 1466 with mate mapped to a different chr
4117 + 431 with mate mapped to a different chr (mapQ>=5)
c8155ca04fe6ba57e570104a006fb7db  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77358/A77358.CBTEAANXX_2.bam Tue.Oct.31.12.10.25.PDT.2017-bioqc01