INFO: SVN version, compile time, version >>> $Id: FindER_1_0_0.java 127368 2017-02-15 23:46:04Z mbilenky $ v 1.0.1e #################################################################################### # # v 1.0.1e (beta), February 15, 2017 : Please report problems to: mbilenky@bcgsc.ca # #################################################################################### INFO: SVN version, compile time >>> $Id: BAMReader_1_0_0.java 125718 2016-12-06 04:23:24Z mbilenky $ INFO: analyzing bam file >>> /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: using samtools >>> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -h /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: generated chromosome length map for 84 chromosomes INFO: read length 75 bp INFO: SVN version, compile time >>> $Id: BAMReader_1_0_0.java 125718 2016-12-06 04:23:24Z mbilenky $ INFO: analyzing bam file >>> /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: using samtools >>> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -h /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: generated chromosome length map for 84 chromosomes INFO: read length 75 bp INFO: no external blacklisting. INFO: outputting enriched regions (ER) into /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/FindER.1.0.1e-A77249.CBTEAANXX_2.v.A77251/A77249.CBTEAANXX_2.vs.A77251.CBTEAANXX_2.FDR_0.05 INFO: profiling region >>> GL000199.1:1-169874 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000199.1:1-169874 . 5865 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000199.1:1-169874 . 7949 fragments are accepted. INFO: generating distance distribution between fragment starts ... INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000199.1:1-169874 inferred bin size 133 (bp). [will be used to bin 'signal' and 'input'] WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 38 [total length = 25802 (bp), fraction of region length = 0.151889] with fraction of all sequences found in enriched regions = 0.452956 INFO: profiling region >>> GL000219.1:1-179198 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000219.1:1-179198 . 3210 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000219.1:1-179198 . 4386 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000217.1:1-172149 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000217.1:1-172149 . 359 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000217.1:1-172149 . 484 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000191.1:1-106433 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000191.1:1-106433 . 134 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000191.1:1-106433 . 216 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000193.1:1-189789 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000193.1:1-189789 . 2166 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000193.1:1-189789 . 3008 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000195.1:1-182896 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000195.1:1-182896 . 4105 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000195.1:1-182896 . 5603 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000197.1:1-37175 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000197.1:1-37175 . 2 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000197.1:1-37175 . 1 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000230.1:1-43691 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000230.1:1-43691 . 249 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000230.1:1-43691 . 318 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000236.1:1-41934 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000236.1:1-41934 . 23 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000236.1:1-41934 . 31 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000211.1:1-166566 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000211.1:1-166566 . 900 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000211.1:1-166566 . 1392 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000232.1:1-40652 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000232.1:1-40652 . 1387 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000232.1:1-40652 . 1816 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000238.1:1-39939 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000238.1:1-39939 . 19 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000238.1:1-39939 . 38 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000215.1:1-172545 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000215.1:1-172545 . 44 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000215.1:1-172545 . 92 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 10:1-135534747 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 10:1-135534747 .. 866036 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 10:1-135534747 ... 1286646 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 7053 [total length = 9175953 (bp), fraction of region length = 0.067702] with fraction of all sequences found in enriched regions = 0.052862 INFO: profiling region >>> GL000234.1:1-40531 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000234.1:1-40531 . 1142 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000234.1:1-40531 . 1493 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000213.1:1-164239 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000213.1:1-164239 . 104 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000213.1:1-164239 . 142 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 11:1-135006516 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 11:1-135006516 .. 815646 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 11:1-135006516 ... 1228368 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 7904 [total length = 2347488 (bp), fraction of region length = 0.017388] with fraction of all sequences found in enriched regions = 0.029341 INFO: profiling region >>> 12:1-133851895 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 12:1-133851895 .. 776572 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 12:1-133851895 ... 1210954 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 7337 [total length = 1958979 (bp), fraction of region length = 0.014635] with fraction of all sequences found in enriched regions = 0.026724 INFO: profiling region >>> GL000209.1:1-159169 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000209.1:1-159169 . 58 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000209.1:1-159169 . 69 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 13:1-115169878 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 13:1-115169878 . 498329 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 13:1-115169878 .. 808974 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 5381 [total length = 1436727 (bp), fraction of region length = 0.012475] with fraction of all sequences found in enriched regions = 0.027676 INFO: profiling region >>> 14:1-107349540 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 14:1-107349540 .. 524570 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 14:1-107349540 .. 816295 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 4628 [total length = 1235676 (bp), fraction of region length = 0.011511] with fraction of all sequences found in enriched regions = 0.024890 INFO: profiling region >>> GL000207.1:1-4262 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000207.1:1-4262 . 37 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000207.1:1-4262 . 57 fragments are accepted. WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000228.1:1-129120 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000228.1:1-129120 . 757 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000228.1:1-129120 . 752 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 15:1-102531392 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 15:1-102531392 .. 530603 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 15:1-102531392 .. 790113 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 4915 [total length = 1376200 (bp), fraction of region length = 0.013422] with fraction of all sequences found in enriched regions = 0.031564 INFO: profiling region >>> 16:1-90354753 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 16:1-90354753 .. 582891 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 16:1-90354753 .. 844747 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 4536 [total length = 1075032 (bp), fraction of region length = 0.011898] with fraction of all sequences found in enriched regions = 0.053935 INFO: profiling region >>> 17:1-81195210 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 17:1-81195210 .. 580062 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 17:1-81195210 .. 820884 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 4759 [total length = 1270653 (bp), fraction of region length = 0.015649] with fraction of all sequences found in enriched regions = 0.032682 INFO: profiling region >>> 18:1-78077248 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 18:1-78077248 . 445659 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 18:1-78077248 .. 671781 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 4359 [total length = 1163853 (bp), fraction of region length = 0.014906] with fraction of all sequences found in enriched regions = 0.032284 INFO: profiling region >>> MT:1-16569 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam MT:1-16569 . 18 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam MT:1-16569 . 50 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 19:1-59128983 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 19:1-59128983 . 455235 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 19:1-59128983 .. 611997 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 3226 [total length = 861342 (bp), fraction of region length = 0.014567] with fraction of all sequences found in enriched regions = 0.032595 INFO: profiling region >>> 1:1-249250621 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 1:1-249250621 ... 1448264 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 1:1-249250621 ..... 2169705 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 15387 [total length = 8662881 (bp), fraction of region length = 0.034756] with fraction of all sequences found in enriched regions = 0.043930 INFO: profiling region >>> 2:1-243199373 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 2:1-243199373 ... 1347939 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 2:1-243199373 ..... 2149068 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 12336 [total length = 3663792 (bp), fraction of region length = 0.015065] with fraction of all sequences found in enriched regions = 0.031369 INFO: profiling region >>> 3:1-198022430 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 3:1-198022430 ... 1060305 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 3:1-198022430 .... 1735762 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 10591 [total length = 3283210 (bp), fraction of region length = 0.016580] with fraction of all sequences found in enriched regions = 0.025248 INFO: profiling region >>> GL000241.1:1-42152 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000241.1:1-42152 . 915 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000241.1:1-42152 . 1429 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> 4:1-191154276 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 4:1-191154276 .. 964630 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 4:1-191154276 .... 1585143 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 10673 [total length = 4728139 (bp), fraction of region length = 0.024735] with fraction of all sequences found in enriched regions = 0.035638 INFO: profiling region >>> 5:1-180915260 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 5:1-180915260 .. 982445 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 5:1-180915260 .... 1548396 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 10077 [total length = 2690559 (bp), fraction of region length = 0.014872] with fraction of all sequences found in enriched regions = 0.027860 INFO: profiling region >>> 6:1-171115067 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 6:1-171115067 .. 937467 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 6:1-171115067 .... 1510002 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 9418 [total length = 2797146 (bp), fraction of region length = 0.016347] with fraction of all sequences found in enriched regions = 0.035150 INFO: profiling region >>> 7:1-159138663 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 7:1-159138663 .. 900297 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 7:1-159138663 ... 1390849 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 8791 [total length = 2347197 (bp), fraction of region length = 0.014749] with fraction of all sequences found in enriched regions = 0.034151 INFO: profiling region >>> 8:1-146364022 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 8:1-146364022 .. 819963 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 8:1-146364022 ... 1274641 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 7921 [total length = 1877277 (bp), fraction of region length = 0.012826] with fraction of all sequences found in enriched regions = 0.027993 INFO: profiling region >>> 9:1-141213431 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 9:1-141213431 .. 702351 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 9:1-141213431 ... 1044167 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 6724 [total length = 1593588 (bp), fraction of region length = 0.011285] with fraction of all sequences found in enriched regions = 0.030051 INFO: profiling region >>> GL000201.1:1-36148 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000201.1:1-36148 . 9 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000201.1:1-36148 . 9 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000247.1:1-36422 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000247.1:1-36422 . 65 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000247.1:1-36422 . 99 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000222.1:1-186861 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000222.1:1-186861 . 364 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000222.1:1-186861 . 458 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000249.1:1-38502 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000249.1:1-38502 . 5 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000249.1:1-38502 . 11 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000220.1:1-161802 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000220.1:1-161802 . 44283 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000220.1:1-161802 . 43485 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 2 [total length = 57518 (bp), fraction of region length = 0.355484] with fraction of all sequences found in enriched regions = 0.005106 INFO: profiling region >>> GL000226.1:1-15008 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000226.1:1-15008 . 2404 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000226.1:1-15008 . 2766 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000243.1:1-43341 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000243.1:1-43341 . 119 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000243.1:1-43341 . 175 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000205.1:1-174588 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000205.1:1-174588 . 4230 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000205.1:1-174588 . 5427 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 31 [total length = 12400 (bp), fraction of region length = 0.071024] with fraction of all sequences found in enriched regions = 0.083714 INFO: profiling region >>> 20:1-63025520 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 20:1-63025520 . 439043 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 20:1-63025520 .. 616408 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 3357 [total length = 795609 (bp), fraction of region length = 0.012624] with fraction of all sequences found in enriched regions = 0.024403 INFO: profiling region >>> 21:1-48129895 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 21:1-48129895 . 221588 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 21:1-48129895 . 338252 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 2568 [total length = 685656 (bp), fraction of region length = 0.014246] with fraction of all sequences found in enriched regions = 0.053580 INFO: profiling region >>> GL000245.1:1-36651 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000245.1:1-36651 . 26 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000245.1:1-36651 . 37 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000203.1:1-37498 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000203.1:1-37498 . 107 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000203.1:1-37498 . 150 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000224.1:1-179693 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000224.1:1-179693 . 6126 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000224.1:1-179693 . 7281 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 14 [total length = 2478 (bp), fraction of region length = 0.013790] with fraction of all sequences found in enriched regions = 0.224715 INFO: profiling region >>> 22:1-51304566 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam 22:1-51304566 . 279612 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam 22:1-51304566 . 366355 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 1984 [total length = 529728 (bp), fraction of region length = 0.010325] with fraction of all sequences found in enriched regions = 0.023651 INFO: profiling region >>> GL000198.1:1-90085 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000198.1:1-90085 . 1374 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000198.1:1-90085 . 1933 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000218.1:1-161147 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000218.1:1-161147 . 1487 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000218.1:1-161147 . 1846 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000239.1:1-33824 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000239.1:1-33824 . 49 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000239.1:1-33824 . 68 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000192.1:1-547496 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000192.1:1-547496 . 2072 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000192.1:1-547496 . 2460 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000194.1:1-191469 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000194.1:1-191469 . 2053 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000194.1:1-191469 . 2596 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000196.1:1-38914 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000196.1:1-38914 . 4 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000196.1:1-38914 . 23 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> X:1-155270560 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam X:1-155270560 .. 905430 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam X:1-155270560 ... 1256261 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 6796 [total length = 3214508 (bp), fraction of region length = 0.020703] with fraction of all sequences found in enriched regions = 0.020868 INFO: profiling region >>> GL000235.1:1-34474 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000235.1:1-34474 . 499 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000235.1:1-34474 . 599 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000212.1:1-186858 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000212.1:1-186858 . 1168 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000212.1:1-186858 . 1967 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> Y:1-59373566 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam Y:1-59373566 . 11867 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam Y:1-59373566 . 16577 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000210.1:1-27682 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000210.1:1-27682 . 27 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000210.1:1-27682 . 55 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000237.1:1-45867 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000237.1:1-45867 . 493 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000237.1:1-45867 . 724 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000231.1:1-27386 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000231.1:1-27386 . 532 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000231.1:1-27386 . 686 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000216.1:1-172294 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000216.1:1-172294 . 5940 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000216.1:1-172294 . 8106 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000233.1:1-45941 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000233.1:1-45941 . 243 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000233.1:1-45941 . 271 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000214.1:1-137718 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000214.1:1-137718 . 4637 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000214.1:1-137718 . 5624 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000208.1:1-92689 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000208.1:1-92689 . 2597 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000208.1:1-92689 . 3358 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 5 [total length = 2000 (bp), fraction of region length = 0.021578] with fraction of all sequences found in enriched regions = 0.303746 INFO: profiling region >>> GL000229.1:1-19913 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000229.1:1-19913 . 390 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000229.1:1-19913 . 527 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000206.1:1-41001 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000206.1:1-41001 . 25 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000206.1:1-41001 . 35 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000240.1:1-41933 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000240.1:1-41933 . 188 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000240.1:1-41933 . 267 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000246.1:1-38154 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000246.1:1-38154 . 44 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000246.1:1-38154 . 58 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000223.1:1-180455 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000223.1:1-180455 . 25 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000223.1:1-180455 . 38 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000200.1:1-187035 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000200.1:1-187035 0 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000200.1:1-187035 0 fragments are accepted. INFO: profiling region >>> GL000248.1:1-39786 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000248.1:1-39786 . 56 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000248.1:1-39786 . 75 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000221.1:1-155397 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000221.1:1-155397 . 376 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000221.1:1-155397 . 540 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000242.1:1-43523 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000242.1:1-43523 . 38 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000242.1:1-43523 . 43 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000204.1:1-81310 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000204.1:1-81310 . 562 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000204.1:1-81310 . 544 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000227.1:1-128374 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000227.1:1-128374 . 70 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000227.1:1-128374 . 81 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000244.1:1-39929 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000244.1:1-39929 . 9 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000244.1:1-39929 . 18 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000202.1:1-40103 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000202.1:1-40103 . 184 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000202.1:1-40103 . 216 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000225.1:1-211173 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77249/A77249.CBTEAANXX_2.bam GL000225.1:1-211173 . 10126 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam GL000225.1:1-211173 . 11162 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: Finished OK