/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77248/A77248.CBTEAANXX_2.bam Tue.Oct.31.10.37.00.PDT.2017-bioqc01
16906846 + 1565038 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
219981 + 18251 duplicates
16331393 + 1060541 mapped (96.60% : 67.76%)
16906846 + 1565038 paired in sequencing
8453423 + 782519 read1
8453423 + 782519 read2
16177707 + 1031352 properly paired (95.69% : 65.90%)
16220620 + 1033526 with itself and mate mapped
110773 + 27015 singletons (0.66% : 1.73%)
14747 + 1188 with mate mapped to a different chr
2012 + 295 with mate mapped to a different chr (mapQ>=5)
9922dc67c1ae1fdddbe9c12a1c26cd41  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77248/A77248.CBTEAANXX_2.bam Tue.Oct.31.10.37.22.PDT.2017-bioqc01