/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77343/A77343.CBKY8ANXX_5.bam Tue.Oct.24.03.15.51.PDT.2017-bioqc06.hpc.bcgsc.ca
21210558 + 2344166 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
431752 + 39686 duplicates
20183328 + 1581112 mapped (95.16% : 67.45%)
21210558 + 2344166 paired in sequencing
10605279 + 1172083 read1
10605279 + 1172083 read2
19916573 + 1532010 properly paired (93.90% : 65.35%)
19995963 + 1536174 with itself and mate mapped
187365 + 44938 singletons (0.88% : 1.92%)
20797 + 1800 with mate mapped to a different chr
2808 + 436 with mate mapped to a different chr (mapQ>=5)
115749e175f2b23371a8103a0fead2c1  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77343/A77343.CBKY8ANXX_5.bam Tue.Oct.24.03.16.20.PDT.2017-bioqc06.hpc.bcgsc.ca