/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77342/A77342.CBKY8ANXX_5.bam Tue.Oct.24.02.45.06.PDT.2017-bioqc06.hpc.bcgsc.ca
20250188 + 2218638 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
255980 + 27474 duplicates
19570274 + 1480868 mapped (96.64% : 66.75%)
20250188 + 2218638 paired in sequencing
10125094 + 1109319 read1
10125094 + 1109319 read2
19333528 + 1434830 properly paired (95.47% : 64.67%)
19434002 + 1439518 with itself and mate mapped
136272 + 41350 singletons (0.67% : 1.86%)
14866 + 1376 with mate mapped to a different chr
2171 + 439 with mate mapped to a different chr (mapQ>=5)
e8cb9b956f100af7517a7da5b9ee6d9c  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77342/A77342.CBKY8ANXX_5.bam Tue.Oct.24.02.45.34.PDT.2017-bioqc06.hpc.bcgsc.ca