/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam Wed.Oct.18.15.15.52.PDT.2017-bioqc06.hpc.bcgsc.ca
55033132 + 5497216 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
1538365 + 134673 duplicates
52741588 + 3886277 mapped (95.84% : 70.70%)
55033132 + 5497216 paired in sequencing
27516566 + 2748608 read1
27516566 + 2748608 read2
51899683 + 3738162 properly paired (94.31% : 68.00%)
52346894 + 3761788 with itself and mate mapped
394694 + 124489 singletons (0.72% : 2.26%)
142537 + 9536 with mate mapped to a different chr
95996 + 5625 with mate mapped to a different chr (mapQ>=5)
22a4b7badc351f3b8cfba8b92b44ed5c  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam Wed.Oct.18.15.17.00.PDT.2017-bioqc06.hpc.bcgsc.ca