/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77333/A77333.CBKY8ANXX_5.bam Mon.Oct.23.23.28.08.PDT.2017-bioqc06.hpc.bcgsc.ca
20133762 + 1926862 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
333875 + 27963 duplicates
19377789 + 1353398 mapped (96.25% : 70.24%)
20133762 + 1926862 paired in sequencing
10066881 + 963431 read1
10066881 + 963431 read2
19110522 + 1311734 properly paired (94.92% : 68.08%)
19227097 + 1317188 with itself and mate mapped
150692 + 36210 singletons (0.75% : 1.88%)
21101 + 1668 with mate mapped to a different chr
3869 + 419 with mate mapped to a different chr (mapQ>=5)
4282db62dcdb9d2344d2dcecbdc5a310  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77333/A77333.CBKY8ANXX_5.bam Mon.Oct.23.23.28.36.PDT.2017-bioqc06.hpc.bcgsc.ca