/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam Wed.Oct.18.14.20.34.PDT.2017-bioqc06.hpc.bcgsc.ca
48469078 + 5124572 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
1295420 + 113915 duplicates
46425742 + 3610102 mapped (95.78% : 70.45%)
48469078 + 5124572 paired in sequencing
24234539 + 2562286 read1
24234539 + 2562286 read2
45735943 + 3480930 properly paired (94.36% : 67.93%)
46083368 + 3500928 with itself and mate mapped
342374 + 109174 singletons (0.71% : 2.13%)
112123 + 8136 with mate mapped to a different chr
74068 + 4392 with mate mapped to a different chr (mapQ>=5)
dcbe6645201382b0e81ade221df4178b  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam Wed.Oct.18.14.21.38.PDT.2017-bioqc06.hpc.bcgsc.ca