INFO: SVN version, compile time, version >>> $Id: FindER_1_0_0.java 127368 2017-02-15 23:46:04Z mbilenky $ v 1.0.1e #################################################################################### # # v 1.0.1e (beta), February 15, 2017 : Please report problems to: mbilenky@bcgsc.ca # #################################################################################### INFO: SVN version, compile time >>> $Id: BAMReader_1_0_0.java 125718 2016-12-06 04:23:24Z mbilenky $ INFO: analyzing bam file >>> /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: using samtools >>> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -h /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: generated chromosome length map for 84 chromosomes INFO: read length 75 bp INFO: SVN version, compile time >>> $Id: BAMReader_1_0_0.java 125718 2016-12-06 04:23:24Z mbilenky $ INFO: analyzing bam file >>> /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: using samtools >>> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -h /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: generated chromosome length map for 84 chromosomes INFO: read length 75 bp INFO: no external blacklisting. INFO: outputting enriched regions (ER) into /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/FindER.1.0.1e-A77327.CBKY8ANXX_5.v.A77331/A77327.CBKY8ANXX_5.vs.A77331.CBKY8ANXX_5.FDR_0.05 INFO: profiling region >>> GL000199.1:1-169874 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000199.1:1-169874 . 732 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000199.1:1-169874 . 5936 fragments are accepted. INFO: generating distance distribution between fragment starts ... INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000199.1:1-169874 inferred bin size 107 (bp). [will be used to bin 'signal' and 'input'] WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000219.1:1-179198 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000219.1:1-179198 . 722 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000219.1:1-179198 . 3389 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000217.1:1-172149 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000217.1:1-172149 . 54 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000217.1:1-172149 . 441 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000191.1:1-106433 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000191.1:1-106433 . 109 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000191.1:1-106433 . 135 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000193.1:1-189789 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000193.1:1-189789 . 344 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000193.1:1-189789 . 3539 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000195.1:1-182896 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000195.1:1-182896 . 2587 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000195.1:1-182896 . 5120 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 16 [total length = 2000 (bp), fraction of region length = 0.010935] with fraction of all sequences found in enriched regions = 0.284525 INFO: profiling region >>> GL000197.1:1-37175 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000197.1:1-37175 0 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000197.1:1-37175 . 3 fragments are accepted. INFO: profiling region >>> GL000230.1:1-43691 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000230.1:1-43691 . 27 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000230.1:1-43691 . 299 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000236.1:1-41934 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000236.1:1-41934 0 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000236.1:1-41934 . 13 fragments are accepted. INFO: profiling region >>> GL000211.1:1-166566 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000211.1:1-166566 . 124 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000211.1:1-166566 . 1031 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000232.1:1-40652 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000232.1:1-40652 . 176 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000232.1:1-40652 . 1539 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000238.1:1-39939 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000238.1:1-39939 . 7 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000238.1:1-39939 . 35 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000215.1:1-172545 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000215.1:1-172545 . 12 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000215.1:1-172545 . 75 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 10:1-135534747 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 10:1-135534747 . 490594 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 10:1-135534747 ... 1158104 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 11014 [total length = 2368010 (bp), fraction of region length = 0.017472] with fraction of all sequences found in enriched regions = 0.185476 INFO: profiling region >>> GL000234.1:1-40531 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000234.1:1-40531 . 152 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000234.1:1-40531 . 1372 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000213.1:1-164239 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000213.1:1-164239 . 19 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000213.1:1-164239 . 240 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 11:1-135006516 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 11:1-135006516 .. 508499 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 11:1-135006516 ... 1121859 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 11936 [total length = 2566240 (bp), fraction of region length = 0.019008] with fraction of all sequences found in enriched regions = 0.199240 INFO: profiling region >>> 12:1-133851895 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 12:1-133851895 . 475545 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 12:1-133851895 ... 1043065 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 11901 [total length = 5105529 (bp), fraction of region length = 0.038143] with fraction of all sequences found in enriched regions = 0.191389 INFO: profiling region >>> GL000209.1:1-159169 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000209.1:1-159169 . 258 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000209.1:1-159169 . 390 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 13:1-115169878 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 13:1-115169878 . 213195 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 13:1-115169878 .. 694448 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 5635 [total length = 1211525 (bp), fraction of region length = 0.010519] with fraction of all sequences found in enriched regions = 0.155894 INFO: profiling region >>> 14:1-107349540 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 14:1-107349540 . 323783 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 14:1-107349540 .. 729080 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 7824 [total length = 1682160 (bp), fraction of region length = 0.015670] with fraction of all sequences found in enriched regions = 0.187116 INFO: profiling region >>> GL000207.1:1-4262 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000207.1:1-4262 . 2 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000207.1:1-4262 . 57 fragments are accepted. WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000228.1:1-129120 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000228.1:1-129120 . 108 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000228.1:1-129120 . 556 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 15:1-102531392 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 15:1-102531392 . 359220 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 15:1-102531392 .. 702733 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 8284 [total length = 1781060 (bp), fraction of region length = 0.017371] with fraction of all sequences found in enriched regions = 0.195731 INFO: profiling region >>> 16:1-90354753 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 16:1-90354753 . 386822 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 16:1-90354753 .. 768166 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 7798 [total length = 4780174 (bp), fraction of region length = 0.052905] with fraction of all sequences found in enriched regions = 0.196087 INFO: profiling region >>> 17:1-81195210 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 17:1-81195210 .. 534336 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 17:1-81195210 .. 805983 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 7813 [total length = 2047006 (bp), fraction of region length = 0.025211] with fraction of all sequences found in enriched regions = 0.152980 INFO: profiling region >>> 18:1-78077248 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 18:1-78077248 . 186830 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 18:1-78077248 .. 577418 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 5642 [total length = 2155244 (bp), fraction of region length = 0.027604] with fraction of all sequences found in enriched regions = 0.178468 INFO: profiling region >>> MT:1-16569 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam MT:1-16569 . 36 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam MT:1-16569 . 1542 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> 19:1-59128983 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 19:1-59128983 . 418747 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 19:1-59128983 .. 627546 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 6226 [total length = 1338590 (bp), fraction of region length = 0.022638] with fraction of all sequences found in enriched regions = 0.167492 INFO: profiling region >>> 1:1-249250621 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 1:1-249250621 .. 988089 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 1:1-249250621 .... 1977500 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 21285 [total length = 5214825 (bp), fraction of region length = 0.020922] with fraction of all sequences found in enriched regions = 0.185499 INFO: profiling region >>> 2:1-243199373 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 2:1-243199373 .. 754313 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 2:1-243199373 .... 1915942 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 20776 [total length = 7043064 (bp), fraction of region length = 0.028960] with fraction of all sequences found in enriched regions = 0.189697 INFO: profiling region >>> 3:1-198022430 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 3:1-198022430 .. 586016 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 3:1-198022430 .... 1521757 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 16162 [total length = 7418358 (bp), fraction of region length = 0.037462] with fraction of all sequences found in enriched regions = 0.177983 INFO: profiling region >>> GL000241.1:1-42152 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000241.1:1-42152 . 165 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000241.1:1-42152 . 1101 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 4:1-191154276 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 4:1-191154276 . 387057 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 4:1-191154276 ... 1346185 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 16839 [total length = 7729101 (bp), fraction of region length = 0.040434] with fraction of all sequences found in enriched regions = 0.192088 INFO: profiling region >>> 5:1-180915260 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 5:1-180915260 . 472449 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 5:1-180915260 ... 1347852 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 14975 [total length = 3219625 (bp), fraction of region length = 0.017796] with fraction of all sequences found in enriched regions = 0.196792 INFO: profiling region >>> 6:1-171115067 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 6:1-171115067 .. 533960 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 6:1-171115067 ... 1323185 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 14927 [total length = 6403683 (bp), fraction of region length = 0.037423] with fraction of all sequences found in enriched regions = 0.191026 INFO: profiling region >>> 7:1-159138663 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 7:1-159138663 . 465580 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 7:1-159138663 ... 1250315 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 13224 [total length = 2843160 (bp), fraction of region length = 0.017866] with fraction of all sequences found in enriched regions = 0.176900 INFO: profiling region >>> 8:1-146364022 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 8:1-146364022 . 404883 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 8:1-146364022 ... 1131580 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 11017 [total length = 2368655 (bp), fraction of region length = 0.016183] with fraction of all sequences found in enriched regions = 0.186825 INFO: profiling region >>> 9:1-141213431 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 9:1-141213431 . 432567 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 9:1-141213431 .. 949753 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 9975 [total length = 2144625 (bp), fraction of region length = 0.015187] with fraction of all sequences found in enriched regions = 0.183314 INFO: profiling region >>> GL000201.1:1-36148 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000201.1:1-36148 . 7 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000201.1:1-36148 . 12 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000247.1:1-36422 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000247.1:1-36422 . 2 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000247.1:1-36422 . 59 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000222.1:1-186861 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000222.1:1-186861 . 69 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000222.1:1-186861 . 355 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000249.1:1-38502 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000249.1:1-38502 . 1 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000249.1:1-38502 . 5 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000220.1:1-161802 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000220.1:1-161802 . 11453 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000220.1:1-161802 . 49436 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000226.1:1-15008 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000226.1:1-15008 . 254 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000226.1:1-15008 . 1387 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000243.1:1-43341 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000243.1:1-43341 . 15 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000243.1:1-43341 . 116 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000205.1:1-174588 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000205.1:1-174588 . 2234 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000205.1:1-174588 . 4520 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 28 [total length = 6020 (bp), fraction of region length = 0.034481] with fraction of all sequences found in enriched regions = 0.474922 INFO: profiling region >>> 20:1-63025520 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 20:1-63025520 . 312918 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 20:1-63025520 .. 582998 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 6005 [total length = 1291075 (bp), fraction of region length = 0.020485] with fraction of all sequences found in enriched regions = 0.189738 INFO: profiling region >>> 21:1-48129895 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 21:1-48129895 . 126527 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 21:1-48129895 . 298891 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 3115 [total length = 669725 (bp), fraction of region length = 0.013915] with fraction of all sequences found in enriched regions = 0.198244 INFO: profiling region >>> GL000245.1:1-36651 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000245.1:1-36651 . 6 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000245.1:1-36651 . 24 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000203.1:1-37498 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000203.1:1-37498 . 19 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000203.1:1-37498 . 129 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000224.1:1-179693 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000224.1:1-179693 . 592 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000224.1:1-179693 . 5129 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> 22:1-51304566 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam 22:1-51304566 . 252171 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam 22:1-51304566 . 381905 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 3470 [total length = 746050 (bp), fraction of region length = 0.014542] with fraction of all sequences found in enriched regions = 0.159318 INFO: profiling region >>> GL000198.1:1-90085 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000198.1:1-90085 . 167 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000198.1:1-90085 . 1655 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000218.1:1-161147 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000218.1:1-161147 . 254 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000218.1:1-161147 . 1579 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000239.1:1-33824 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000239.1:1-33824 . 5 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000239.1:1-33824 . 54 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000192.1:1-547496 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000192.1:1-547496 . 819 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000192.1:1-547496 . 2024 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000194.1:1-191469 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000194.1:1-191469 . 266 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000194.1:1-191469 . 1587 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000196.1:1-38914 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000196.1:1-38914 . 6 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000196.1:1-38914 . 8 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> X:1-155270560 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam X:1-155270560 . 183456 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam X:1-155270560 .. 567552 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000235.1:1-34474 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000235.1:1-34474 . 60 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000235.1:1-34474 . 355 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000212.1:1-186858 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000212.1:1-186858 . 213 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000212.1:1-186858 . 2095 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> Y:1-59373566 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam Y:1-59373566 . 14459 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam Y:1-59373566 . 71749 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000210.1:1-27682 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000210.1:1-27682 . 10 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000210.1:1-27682 . 31 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000237.1:1-45867 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000237.1:1-45867 . 39 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000237.1:1-45867 . 558 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000231.1:1-27386 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000231.1:1-27386 . 73 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000231.1:1-27386 . 658 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000216.1:1-172294 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000216.1:1-172294 . 908 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000216.1:1-172294 . 6800 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000233.1:1-45941 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000233.1:1-45941 . 28 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000233.1:1-45941 . 308 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000214.1:1-137718 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000214.1:1-137718 . 670 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000214.1:1-137718 . 4374 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000208.1:1-92689 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000208.1:1-92689 . 205 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000208.1:1-92689 . 2081 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000229.1:1-19913 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000229.1:1-19913 . 40 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000229.1:1-19913 . 498 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000206.1:1-41001 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000206.1:1-41001 . 45 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000206.1:1-41001 . 55 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000240.1:1-41933 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000240.1:1-41933 . 9 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000240.1:1-41933 . 89 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000246.1:1-38154 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000246.1:1-38154 . 8 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000246.1:1-38154 . 16 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000223.1:1-180455 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000223.1:1-180455 . 2 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000223.1:1-180455 . 13 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000200.1:1-187035 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000200.1:1-187035 0 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000200.1:1-187035 0 fragments are accepted. INFO: profiling region >>> GL000248.1:1-39786 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000248.1:1-39786 . 19 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000248.1:1-39786 . 59 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000221.1:1-155397 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000221.1:1-155397 . 44 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000221.1:1-155397 . 444 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000242.1:1-43523 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000242.1:1-43523 . 20 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000242.1:1-43523 . 40 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000204.1:1-81310 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000204.1:1-81310 . 195 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000204.1:1-81310 . 626 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000227.1:1-128374 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000227.1:1-128374 . 35 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000227.1:1-128374 . 93 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000244.1:1-39929 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000244.1:1-39929 . 1 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000244.1:1-39929 . 19 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000202.1:1-40103 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000202.1:1-40103 . 97 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000202.1:1-40103 . 280 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000225.1:1-211173 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam GL000225.1:1-211173 . 1534 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77331/A77331.CBKY8ANXX_5.bam GL000225.1:1-211173 . 10373 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: Finished OK