/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam Mon.Oct.23.20.33.58.PDT.2017-bioqc06.hpc.bcgsc.ca
19386572 + 2270226 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
310014 + 47779 duplicates
19109668 + 1577060 mapped (98.57% : 69.47%)
19386572 + 2270226 paired in sequencing
9693286 + 1135113 read1
9693286 + 1135113 read2
18800133 + 1526426 properly paired (96.98% : 67.24%)
19025501 + 1536882 with itself and mate mapped
84167 + 40178 singletons (0.43% : 1.77%)
10005 + 1206 with mate mapped to a different chr
2571 + 437 with mate mapped to a different chr (mapQ>=5)
2ecfe6751b4d9c333f0de44f100bf84c  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77327/A77327.CBKY8ANXX_5.bam Mon.Oct.23.20.34.26.PDT.2017-bioqc06.hpc.bcgsc.ca