/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77324/A77324.CBKY8ANXX_5.bam Mon.Oct.23.19.39.02.PDT.2017-bioqc06.hpc.bcgsc.ca
42454248 + 4511452 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
908434 + 88360 duplicates
40623298 + 3061028 mapped (95.69% : 67.85%)
42454248 + 4511452 paired in sequencing
21227124 + 2255726 read1
21227124 + 2255726 read2
40106014 + 2962151 properly paired (94.47% : 65.66%)
40266181 + 2969647 with itself and mate mapped
357117 + 91381 singletons (0.84% : 2.03%)
39799 + 3260 with mate mapped to a different chr
4488 + 797 with mate mapped to a different chr (mapQ>=5)
85b7784c9e7bd16b554f6c0c10cdf7e2  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77324/A77324.CBKY8ANXX_5.bam Mon.Oct.23.19.39.58.PDT.2017-bioqc06.hpc.bcgsc.ca