40181396 + 0 in total (QC-passed reads + QC-failed reads) 0 + 0 secondary 0 + 0 supplementary 0 + 0 duplicates 40181396 + 0 mapped (100.00% : N/A) 40181396 + 0 paired in sequencing 20136175 + 0 read1 20045221 + 0 read2 39232304 + 0 properly paired (97.64% : N/A) 40064851 + 0 with itself and mate mapped 116545 + 0 singletons (0.29% : N/A) 12700 + 0 with mate mapped to a different chr 12700 + 0 with mate mapped to a different chr (mapQ>=5)