/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam Wed.Oct.18.14.26.21.PDT.2017-bioqc01
40737562 + 2922918 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
1001734 + 62831 duplicates
38475326 + 2045450 mapped (94.45% : 69.98%)
40737562 + 2922918 paired in sequencing
20368781 + 1461459 read1
20368781 + 1461459 read2
37641909 + 1947938 properly paired (92.40% : 66.64%)
38137768 + 1966944 with itself and mate mapped
337558 + 78506 singletons (0.83% : 2.69%)
112630 + 5767 with mate mapped to a different chr
71840 + 3195 with mate mapped to a different chr (mapQ>=5)
830a4b6705849e46e1c95da9f3cacdac  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam Wed.Oct.18.14.27.55.PDT.2017-bioqc01