/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77312/A77312.CBKY8ANXX_4.bam Mon.Oct.23.22.09.06.PDT.2017-bioqc01
19386654 + 1351028 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
312387 + 21856 duplicates
18619038 + 979326 mapped (96.04% : 72.49%)
19386654 + 1351028 paired in sequencing
9693327 + 675514 read1
9693327 + 675514 read2
18306900 + 943380 properly paired (94.43% : 69.83%)
18468586 + 949110 with itself and mate mapped
150452 + 30216 singletons (0.78% : 2.24%)
19793 + 1178 with mate mapped to a different chr
2940 + 354 with mate mapped to a different chr (mapQ>=5)
73ed7af9595c5c368f8fdd6d2bd84015  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77312/A77312.CBKY8ANXX_4.bam Mon.Oct.23.22.09.50.PDT.2017-bioqc01