/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77311/A77311.CBKY8ANXX_4.bam Wed.Oct.18.14.01.32.PDT.2017-bioqc01
47603984 + 3425558 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
1056809 + 66318 duplicates
45647463 + 2460258 mapped (95.89% : 71.82%)
47603984 + 3425558 paired in sequencing
23801992 + 1712779 read1
23801992 + 1712779 read2
44768688 + 2361564 properly paired (94.04% : 68.94%)
45286086 + 2381258 with itself and mate mapped
361377 + 79000 singletons (0.76% : 2.31%)
183785 + 8168 with mate mapped to a different chr
136981 + 5429 with mate mapped to a different chr (mapQ>=5)
f60b92d0e8d06032fbb2a05ef335ec10  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77311/A77311.CBKY8ANXX_4.bam Wed.Oct.18.14.03.19.PDT.2017-bioqc01