/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77309/A77309.CBKY8ANXX_4.bam Mon.Oct.23.21.25.31.PDT.2017-bioqc01
37806646 + 2627082 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
688154 + 49256 duplicates
36679897 + 1905285 mapped (97.02% : 72.52%)
37806646 + 2627082 paired in sequencing
18903323 + 1313541 read1
18903323 + 1313541 read2
35819357 + 1818670 properly paired (94.74% : 69.23%)
36415081 + 1839148 with itself and mate mapped
264816 + 66137 singletons (0.70% : 2.52%)
46104 + 2842 with mate mapped to a different chr
9897 + 910 with mate mapped to a different chr (mapQ>=5)
bd99a89f40f9924b034044b89e98d23f  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77309/A77309.CBKY8ANXX_4.bam Mon.Oct.23.21.26.58.PDT.2017-bioqc01