/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam Wed.Oct.18.13.35.45.PDT.2017-bioqc01
50624756 + 3618014 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
1307212 + 83251 duplicates
48119725 + 2580641 mapped (95.05% : 71.33%)
50624756 + 3618014 paired in sequencing
25312378 + 1809007 read1
25312378 + 1809007 read2
47072949 + 2462185 properly paired (92.98% : 68.05%)
47720007 + 2487551 with itself and mate mapped
399718 + 93090 singletons (0.79% : 2.57%)
248656 + 10990 with mate mapped to a different chr
196500 + 7802 with mate mapped to a different chr (mapQ>=5)
33b47270554dc0c89d97fe5bf7aba678  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam Wed.Oct.18.13.37.35.PDT.2017-bioqc01