/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77303/A77303.CBKY8ANXX_4.bam Mon.Oct.23.19.06.35.PDT.2017-bioqc01
19636328 + 1484698 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
378649 + 28201 duplicates
18555102 + 1050112 mapped (94.49% : 70.73%)
19636328 + 1484698 paired in sequencing
9818164 + 742349 read1
9818164 + 742349 read2
18283682 + 1012644 properly paired (93.11% : 68.21%)
18376364 + 1015970 with itself and mate mapped
178738 + 34142 singletons (0.91% : 2.30%)
18314 + 978 with mate mapped to a different chr
2156 + 249 with mate mapped to a different chr (mapQ>=5)
41fff9cdb9ee1ab807cf68d22152b367  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77303/A77303.CBKY8ANXX_4.bam Mon.Oct.23.19.07.21.PDT.2017-bioqc01