/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam Tue.Oct.10.15.27.41.PDT.2017-bioqc01
41242622 + 2799322 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
0 + 0 supplementary
803809 + 48334 duplicates
39541618 + 2037855 mapped (95.88% : 72.80%)
41242622 + 2799322 paired in sequencing
20621311 + 1399661 read1
20621311 + 1399661 read2
38931048 + 1967719 properly paired (94.40% : 70.29%)
39208198 + 1977025 with itself and mate mapped
333420 + 60830 singletons (0.81% : 2.17%)
43320 + 2500 with mate mapped to a different chr
7109 + 629 with mate mapped to a different chr (mapQ>=5)
7358882c5ff6b1bf39858a5b434d316b  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam Tue.Oct.10.15.29.17.PDT.2017-bioqc01