README.GRCh37-lite  July 2, 2010
From ftp://ftp.ncbi.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/
Homo_sapiens/GRCh37/special_requests

GRCh37-lite is a subset of the full GRCh37 human genome assembly (assembly 
accession GCA_000001405.1) plus the human mitochondrial genome reference 
sequence (the "rCRS") from Mitomap.org. This set of sequences excludes all the 
alternate loci scaffolds of the full GRCh37 assembly, and has the 
pseudo-autosomal regions (PARs) on chromosome Y masked with Ns. This haploid 
representation of the genome is provided as a convenience for use in alignment 
pipelines that cannot handle the multiple placements expected in the PARs and 
in regions of the genome that are represented by the alternate loci.

URLs
Genome Reference Consortium (GRC):
http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/index.shtml
Mitomap.org:
http://www.mitomap.org/MITOMAP

GRCh37-lite.fa.gz contains the following sequences in gzipped fasta format:
#Name	INSDC_Accession.ver	Notes
1	CM000663.1
2	CM000664.1
3	CM000665.1
4	CM000666.1
5	CM000667.1
6	CM000668.1
7	CM000669.1
8	CM000670.1
9	CM000671.1
10	CM000672.1
11	CM000673.1
12	CM000674.1
13	CM000675.1
14	CM000676.1
15	CM000677.1
16	CM000678.1
17	CM000679.1
18	CM000680.1
19	CM000681.1
20	CM000682.1
21	CM000683.1
22	CM000684.1
X	CM000685.1
Y	CM000686.1	PAR regions masked with Ns (bases 10001..2649520 & 59034050..59363566)
MT	J01415.2
HSCHR1_RANDOM_CTG5	GL000191.1
HSCHR1_RANDOM_CTG12	GL000192.1
HSCHR4_RANDOM_CTG2	GL000193.1
HSCHR4_RANDOM_CTG3	GL000194.1
HSCHR7_RANDOM_CTG1	GL000195.1
HSCHR8_RANDOM_CTG1	GL000196.1
HSCHR8_RANDOM_CTG4	GL000197.1
HSCHR9_RANDOM_CTG1	GL000198.1
HSCHR9_RANDOM_CTG2	GL000199.1
HSCHR9_RANDOM_CTG4	GL000200.1
HSCHR9_RANDOM_CTG5	GL000201.1
HSCHR11_RANDOM_CTG2	GL000202.1
HSCHR17_RANDOM_CTG1	GL000203.1
HSCHR17_RANDOM_CTG2	GL000204.1
HSCHR17_RANDOM_CTG3	GL000205.1
HSCHR17_RANDOM_CTG4	GL000206.1
HSCHR18_RANDOM_CTG1	GL000207.1
HSCHR19_RANDOM_CTG1	GL000208.1
HSCHR19_RANDOM_CTG2	GL000209.1
HSCHR21_RANDOM_CTG9	GL000210.1
HSCHRUN_RANDOM_CTG1	GL000211.1
HSCHRUN_RANDOM_CTG2	GL000212.1
HSCHRUN_RANDOM_CTG3	GL000213.1
HSCHRUN_RANDOM_CTG4	GL000214.1
HSCHRUN_RANDOM_CTG5	GL000215.1
HSCHRUN_RANDOM_CTG6	GL000216.1
HSCHRUN_RANDOM_CTG7	GL000217.1
HSCHRUN_RANDOM_CTG9	GL000218.1
HSCHRUN_RANDOM_CTG10	GL000219.1
HSCHRUN_RANDOM_CTG11	GL000220.1
HSCHRUN_RANDOM_CTG13	GL000221.1
HSCHRUN_RANDOM_CTG14	GL000222.1
HSCHRUN_RANDOM_CTG15	GL000223.1
HSCHRUN_RANDOM_CTG16	GL000224.1
HSCHRUN_RANDOM_CTG17	GL000225.1
HSCHRUN_RANDOM_CTG19	GL000226.1
HSCHRUN_RANDOM_CTG20	GL000227.1
HSCHRUN_RANDOM_CTG21	GL000228.1
HSCHRUN_RANDOM_CTG22	GL000229.1
HSCHRUN_RANDOM_CTG23	GL000230.1
HSCHRUN_RANDOM_CTG24	GL000231.1
HSCHRUN_RANDOM_CTG25	GL000232.1
HSCHRUN_RANDOM_CTG26	GL000233.1
HSCHRUN_RANDOM_CTG27	GL000234.1
HSCHRUN_RANDOM_CTG28	GL000235.1
HSCHRUN_RANDOM_CTG29	GL000236.1
HSCHRUN_RANDOM_CTG30	GL000237.1
HSCHRUN_RANDOM_CTG31	GL000238.1
HSCHRUN_RANDOM_CTG32	GL000239.1
HSCHRUN_RANDOM_CTG33	GL000240.1
HSCHRUN_RANDOM_CTG34	GL000241.1
HSCHRUN_RANDOM_CTG35	GL000242.1
HSCHRUN_RANDOM_CTG36	GL000243.1
HSCHRUN_RANDOM_CTG37	GL000244.1
HSCHRUN_RANDOM_CTG38	GL000245.1
HSCHRUN_RANDOM_CTG39	GL000246.1
HSCHRUN_RANDOM_CTG40	GL000247.1
HSCHRUN_RANDOM_CTG41	GL000248.1
HSCHRUN_RANDOM_CTG42	GL000249.1
#---